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83 Open 377 Closed
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Issues list

Stacking XYZ dimension images of mouse brain into 3D Volume
#825 opened May 8, 2024 by sleepingcat4
@giovp
sort_order for pl.spatial_scatter
#824 opened May 4, 2024 by JBreunig
Clustering according to image features
#822 opened Apr 25, 2024 by gboscagli
@giovp
Extracted cropped spot images
#820 opened Apr 18, 2024 by KSimi7
@giovp
1
sq.gr.ligrec crashing kernel/script with VisiumHD (>100k spots/spatial barcodes) - Squidpy incompatible with single-cell level spatial technologies?
#819 opened Apr 18, 2024 by Rafael-Silva-Oliveira
@michalk8
3
Should the raw H&E image (.tif) and the image stored in anndata be in the same orientation?
#818 opened Apr 17, 2024 by ddzhang3
@giovp
KeyError: '72' when reading in Nanostring CosMx data
#815 opened Apr 10, 2024 by josiejenyne
4
Ripley L measure with n_observations
#813 opened Mar 25, 2024 by georgezakinih
@giovp
The Kernel crashed while executing code in the current cell
#812 opened Mar 22, 2024 by spatts14
@giovp
1
Using squidpy.pl.spatial_segment on Xenium data
#811 opened Mar 22, 2024 by justinesjw
@giovp
EuroPython talk that can give feature insights to SquidPy
#800 opened Feb 15, 2024 by inaciomdrs
2
NaN value when importing Visium dataset
#797 opened Feb 6, 2024 by Lem-P
@michalk8
9
sq.pl.spatial_scatter return_ax = True not working
#791 opened Jan 11, 2024 by parser-algebra-0m
@giovp
Allow for spatial perturbation screen analysis squidpy2.0 Everything releated to a Squidpy 2.0 release workstream Major workstreams for the Squidpy 2.0 release
#790 opened Jan 8, 2024 by timtreis
6
Include more options for niche definitions squidpy2.0 Everything releated to a Squidpy 2.0 release workstream Major workstreams for the Squidpy 2.0 release
#789 opened Jan 8, 2024 by timtreis
@timtreis @LLehner
1
Analysing 3D data squidpy2.0 Everything releated to a Squidpy 2.0 release workstream Major workstreams for the Squidpy 2.0 release
#788 opened Jan 8, 2024 by timtreis
2 tasks
Any existing effort to port squidpy functionalities to R?
#787 opened Jan 7, 2024 by stemangiola
@giovp
Memory Consumption Issue in CosMx.
#786 opened Dec 25, 2023 by ayumatsubo
Comparisons between groups of samples squidpy2.0 Everything releated to a Squidpy 2.0 release workstream Major workstreams for the Squidpy 2.0 release
#784 opened Dec 15, 2023 by grst
5
Parameters of squidpy.gr.spatial_neighbors()
#783 opened Dec 13, 2023 by Qirongmao97
@giovp
1
Cannot load Visium_FFPE_Mouse_Brain,Visium_FFPE_Human_Normal_Prostate. Error: HTTP Error 403: Forbidden
#782 opened Dec 12, 2023 by Rayjrz
@michalk8
2
Do we need to normalization and scaling before calculating spatial autocorrelation?
#779 opened Dec 12, 2023 by Qirongmao97
@giovp
1
Geographically weighted regression (GWR) for gene-gene correlation
#776 opened Dec 9, 2023 by SNOL2
sq.pl.spatial_segment: wrong cells selected by groups parameter
#770 opened Nov 10, 2023 by colganwi
@michalk8
1
CODEX
#768 opened Oct 26, 2023 by matthew-lee1
@giovp
1
ProTip! Updated in the last three days: updated:>2024-05-06.