scvi-tools 0.7.0-alpha.5

scvi is now scvi-tools. This is a major upgrade and will break all previous code.

See the docs for all the new functionality.

In this alpha release, we fixed various bugs in our DE functionality, restored proper defaults, reduced an extra pass on the train set per epoch when using early stopping, and fixed bugs with ScviConfig.

This release is available via PyPi:

pip install scvi-tools

We are currently figuring out issues with our conda build.

Please report any issues on GitHub.