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Issues: scverse/scirpy

scverse datastructure for AIRR data
#327 by grst was closed Apr 7, 2023
Closed 57
module 'scirpy.pp' has no attribute 'index_chains'
#416 by xuezhang335 was closed Jun 9, 2023
Closed 2
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44 Open 238 Closed
44 Open 238 Closed
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Issues list

When running 'ir.tl.define_clonotypes' on MacOS14.4.1, I've got an Error:module 'os' has no attribute 'sched_getaffinity' bug Something isn't working
#517 opened May 14, 2024 by jppQaQ
1
clone definition purely using CDR3 sequence
#507 opened Apr 15, 2024 by zktuong
1
Community tutorial page
#495 opened Feb 28, 2024 by grst
Add the Morisita-Horn index for repertoire overlap similarity scores
#488 opened Jan 29, 2024 by NicolasSompairac
1
Make sure axes of nextwork plots don't have any ticks bug Something isn't working good first issue Good for newcomers
#486 opened Jan 26, 2024 by grst
Large dataset tutorial documentation Improvements or additions to documentation
#479 opened Jan 11, 2024 by grst
IEDB database cdr3_aa stored as junction_aa bug Something isn't working
#469 opened Dec 14, 2023 by racng
1
10
ir.tl.chain_qc doesn't mark cells with no IR bug Something isn't working
#452 opened Sep 18, 2023 by a-munoz-rojas
1
@grst
2
Can't install scirpy on Apple Silicon bug Something isn't working
#450 opened Aug 18, 2023 by a-munoz-rojas
8
Can't save h5mu from Scirpy processed gex+bcr+tcr data if I copy airr into obs bug Something isn't working
#434 opened Jul 19, 2023 by Ngort
1
Plot preview doesn't show in API docs documentation Improvements or additions to documentation
#429 opened Jul 5, 2023 by grst
1
1
In ir.pl.repertoire_overlap() function the fraction param is not working bug Something isn't working
#424 opened Jul 3, 2023 by llumdi
4
Can Scirpy be used for the analysis of regular RNA-seq sequencing data? question Further information is requested
#417 opened Jun 8, 2023 by yirenheihei
1
Hackathon: add generic_ir_from_biocypher() function to ingest TCR data
#404 opened Apr 28, 2023 by slobentanzer
3
Refactor _get_color function to stop using private scanpy functions and to work with mudata
#388 opened Mar 29, 2023 by grst
Split IO into separate package
#385 opened Mar 16, 2023 by grst
2
clean up usage of _is_na, _is_true and _is_false
#380 opened Jan 29, 2023 by grst
antigen specificity prediction
#371 opened Oct 18, 2022 by grst
Scalability to >1M cells
#370 opened Oct 9, 2022 by grst
Autoencoder-based sequence embedding
#369 opened Oct 9, 2022 by grst
10
speed up define_clonotypes
#368 opened Oct 9, 2022 by grst
1
Speed up read_airr
#367 opened Oct 9, 2022 by grst
spatial airr data
#354 opened Jul 6, 2022 by grst
5
Why clonotype_imbalance is deprecated?
#330 opened Mar 30, 2022 by naity2
5
Remove unused labels from antigen-annotated clonotype networks good first issue Good for newcomers
#321 opened Feb 2, 2022 by FFinotello
ProTip! What’s not been updated in a month: updated:<2024-04-16.