This bundle contains the series of scripts used to produce the analysis of Young et al. All scripts are written under MATLAB and have been tested using MATLAB R2013b. The following MATLAB toolboxes are required to run all the components:
- Curve Fitting Toolbox
- Image Processing Toolbox
- Mapping Toolbox
- Optimization Toolbox
- Statistics Toolbox
The bundle contains 3 directories:
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the spindleAnalysis directory contains the scripts used to align the spindle width/length measurements. The startup script is called runSpindleAnalysis.m and looks for XLS files containing time-series of the spindle lengths.
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the photoactivation directory contains the scripts used to process the spindle photoactivation experiments into flux/turnover measurements. It assumes the data has been imported onto an OMERO server and makes extensive use of the OMERO.matlab toolbox
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the extern directory contains third-party MATLAB functions under GPL-license used for running the code.