GitHub - sbellan61/Bellan-2013-Lancet-DHS-analysis-: Repository to replicate analysis from: Bellan SE, Fiorella KJ, Melesse DY, Getz WM, Williams BG, et al. (2013) Extra-couple HIV transmission in sub-Saharan Africa: a mathematical modelling study of survey data. Lancet 6736: 1

sbellan61 / Bellan-2013-Lancet-DHS-analysis- Public

Repository to replicate analysis from: Bellan SE, Fiorella KJ, Melesse DY, Getz WM, Williams BG, et al. (2013) Extra-couple HIV transmission in sub-Saharan Africa: a mathematical modelling study of survey data. Lancet 6736: 1–9. doi: 10.1016/S0140-6736(12)61960-6.

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commits
DHS sets		DHS sets
.#finalallcountryresults2.R		.#finalallcountryresults2.R
.Rhistory		.Rhistory
.areldisc6.R.swp		.areldisc6.R.swp
2009 art prev.csv		2009 art prev.csv
ARV coverage model.pdf		ARV coverage model.pdf
LSP plot.pdf		LSP plot.pdf
SPAR plot.pdf		SPAR plot.pdf
SSA prevalence.csv		SSA prevalence.csv
UNAIDS Global Report 2012 tables.pdf		UNAIDS Global Report 2012 tables.pdf
UNAIDS Global Report 2012 tables.xlsx		UNAIDS Global Report 2012 tables.xlsx
alldhs raw.Rdata		alldhs raw.Rdata
alldhs.Rdata		alldhs.Rdata
allepicf.5.Rdata		allepicf.5.Rdata
allepicf.Rdata		allepicf.Rdata
allepicm.5.Rdata		allepicm.5.Rdata
allepicm.Rdata		allepicm.Rdata
areldisc6.R		areldisc6.R
art.prev.Rdata		art.prev.Rdata
circum tab.csv		circum tab.csv
clstuff.R		clstuff.R
combine instance results.R		combine instance results.R
combine wa.R		combine wa.R
csurv.Rdata		csurv.Rdata
dhs prep.R		dhs prep.R
dhs problems.pdf		dhs problems.pdf
ds.name.Rdata		ds.name.Rdata
epicfnart.Rdata		epicfnart.Rdata
epicmnart.Rdata		epicmnart.Rdata
eyeballing cascade weibull mortality fit.pdf		eyeballing cascade weibull mortality fit.pdf
fig 2b.R		fig 2b.R
finalallcountryresults130626.R		finalallcountryresults130626.R
finalallcountryresults2.R		finalallcountryresults2.R
fprev zam fig 1.pdf		fprev zam fig 1.pdf
gentest.csv		gentest.csv
het analy.R		het analy.R
loss table copy.csv		loss table copy.csv
loss table.csv		loss table.csv
mprev zam fig 1.pdf		mprev zam fig 1.pdf
pars.arr.Rdata		pars.arr.Rdata
pcalc5.R		pcalc5.R
pitester.R		pitester.R
sens an.R		sens an.R
ser breakdown.csv		ser breakdown.csv
sigmas.Rdata		sigmas.Rdata
sim dhs dat.R		sim dhs dat.R
ssa epic .5.pdf		ssa epic .5.pdf
ssa epic.pdf		ssa epic.pdf
stoch mort.R		stoch mort.R
surv by age for doc.pdf		surv by age for doc.pdf
testing table.csv		testing table.csv
wa epic .5.pdf		wa epic .5.pdf
wa epic.pdf		wa epic.pdf