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Hello! I'm looking into options on how we could integrate spatial data with scRNA seq data from mouse brains. We were identifying different clusters and subpopulations of cells along the mouse brain and the next step would be determining where these cells are located in the brain. I was wondering if anyone here had any insight into which technologies for spatial transcriptomics would be suited for a project like this. Is imaging based or sequencing based better? Which is cheaper and easier to use?
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Hello! I'm looking into options on how we could integrate spatial data with scRNA seq data from mouse brains. We were identifying different clusters and subpopulations of cells along the mouse brain and the next step would be determining where these cells are located in the brain. I was wondering if anyone here had any insight into which technologies for spatial transcriptomics would be suited for a project like this. Is imaging based or sequencing based better? Which is cheaper and easier to use?
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