Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

add dsb to SeuratWrappers #130

Open
wants to merge 4 commits into
base: master
Choose a base branch
from
Open

add dsb to SeuratWrappers #130

wants to merge 4 commits into from

Conversation

MattPM
Copy link

@MattPM MattPM commented Apr 28, 2022

dsb is an R package for normalizing ADT data.

manuscript: https://www.nature.com/articles/s41467-022-29356-8
CRAN: https://CRAN.R-project.org/package=dsb
github: https://github.com/niaid/dsb

We would like to add dsb to Seurat wrappers. Please let us know if we correctly added the link to the vignette build from CI in readme.md (see input to readme added below with the htmlpreview.github.io based html link. Let us know if anything else is required.

Thank you!

| dsb | Normalize and denoise ADT protein data using dsb with Seurat | Mulè et al., Nature Communications 2022 | https://CRAN.R-project.org/package=dsb |

R/dsb.R Outdated Show resolved Hide resolved
@MattPM
Copy link
Author

MattPM commented Jun 3, 2022

Thanks for your note @mojaveazure please see comment and latest commit.
Best,
-Matt

@MattPM
Copy link
Author

MattPM commented Aug 15, 2022

Hi @mojaveazure

I addressed your comment in the commit above 7564726. Functions from the package are now included.

Wanted to check in and see if you're waiting for anything else on my end?

Please let me know and thanks again.

@MattPM
Copy link
Author

MattPM commented Jan 17, 2023

Hello @mojaveazure
Please see comments above. I addressed your previous comment in the commit above. Functions from the package are now included.

Are you waiting for anything else on my end? Many thanks.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants