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Recommended workflow? #71

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stevendavis opened this issue Aug 8, 2018 · 0 comments
Open

Recommended workflow? #71

stevendavis opened this issue Aug 8, 2018 · 0 comments

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@stevendavis
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stevendavis commented Aug 8, 2018 •
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What is the recommended workflow to produce a VCF file when starting with two unaligned bacterial whole-genome fasta files, each approximately 3 million nucleotides? Any particular aligner and file format conversion utilities you can recommend?
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