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How to understand monomorphic sites? #107

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xuechunxu opened this issue Dec 6, 2021 · 1 comment
Open

How to understand monomorphic sites? #107

xuechunxu opened this issue Dec 6, 2021 · 1 comment

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@xuechunxu
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Hi,

Could you please show some examples to help us understand the parameter -b?
-b output monomorphic sites, used for BEAST

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@CarolineOhrman
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My impression is that the default is to output monomorphic sites but when the -b option is used these are skipped. The parameter description should be changed if this is the case.

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@CarolineOhrman @xuechunxu