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I assembled a genome using Canu v1.8 and wanted apply circlator v1.5.5.
Now, as a dependency, circlator can install Canu v1.4 -- can you clarify whether the versions should match?
Also, I found that when using Canu v1.8, seems that circlator fails to find the version due to a regrex issue, as has been pointed out and fix I thought ...
Can you clarify which is the better solution, install Canu 1.4 and use that although my assembly was with Canu 1.8, or fix the regrex issue.
Thanks.
Dieter
The text was updated successfully, but these errors were encountered:
Ssame issue here using canu 2.1.1, can not find canu version. There seems a thread indicating the authors had solved this issue in 2017. So I edited the code in the external_progs.py as below for matching canu version:
To solve this issue, simply install canu 2.1.1 using their installation instructions; i.e., do *not* use conda for it.
The one I ran into comes after that :-)
On Feb 28, 2021, at 07:08, xpli2020 ***@***.***> wrote:
Ssame issue here using canu 2.1.1, can not find canu version. There seems a thread indicating the authors had solved this issue in 2017.
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Hi,
I assembled a genome using Canu v1.8 and wanted apply circlator v1.5.5.
Now, as a dependency, circlator can install Canu v1.4 -- can you clarify whether the versions should match?
Also, I found that when using Canu v1.8, seems that circlator fails to find the version due to a regrex issue, as has been pointed out and fix I thought ...
Can you clarify which is the better solution, install Canu 1.4 and use that although my assembly was with Canu 1.8, or fix the regrex issue.
Thanks.
Dieter
The text was updated successfully, but these errors were encountered: