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Add SAM recommendation of MAPQ=0 for unmapped reads #753

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Add SAM recommendation of MAPQ=0 for unmapped reads #753

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1 change: 1 addition & 0 deletions SAMv1.tex
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Expand Up @@ -737,6 +737,7 @@ \section{Recommended Practice for the SAM Format}
\item Unmapped reads should be stored in the orientation in which they came
off the sequencing machine and have their {\sf reverse} flag bit~(0x10)
correspondingly unset.
\item Unmapped reads should have mapping quality zero.
\end{enumerate}
\item Multiple mapping
\begin{enumerate}[label=\arabic*]
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