Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

htsget: add samples query parameter, principally to select subset of VCF columns #430

Open
wants to merge 2 commits into
base: master
Choose a base branch
from
Open

htsget: add samples query parameter, principally to select subset of VCF columns #430

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
d989abe
htsget: add `samples` query parameter, principally to select subset o…
mlin Jul 10, 2019
482be96
order clarification
mlin Jul 10, 2019
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
10 changes: 10 additions & 0 deletions htsget.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -254,6 +254,16 @@ A comma separated list of tags to exclude, default: none.

The server SHOULD respond with an `InvalidInput` error if `tags` and `notags` intersect.
</td></tr>
<tr markdown="block"><td>

`samples`
_optional_
</td><td>
A comma separated list of samples to include, default: all. For VCF responses, this selects a subset of columns from a multi-sample VCF dataset; the order of response columns is unspecified, and in particular, needs not match the order of this requested list.

The server SHOULD respond with an `InvalidInput` error if a nonexistent `sample` is listed.
</td></tr>
<tr markdown="block"><td>
</table>

### Field filtering
Expand Down