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Local Alleles (PR #434) applied to VCFv4.4 #80

Local Alleles (PR #434) applied to VCFv4.4

Local Alleles (PR #434) applied to VCFv4.4 #80

Workflow file for this run

name: Handle PDF pull request
on:
pull_request:
paths: '*.tex'
jobs:
LaTeX:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Identify changed LaTeX documents
env:
pr_number: ${{ github.event.number }}
base_sha: ${{ github.event.pull_request.base.sha }}
head_sha: ${{ github.event.pull_request.head.sha }}
run: |
mergebase_sha=$(git merge-base $base_sha $head_sha)
echo "mergebase_sha=$mergebase_sha" >> $GITHUB_ENV
changed=$(git diff-tree --name-only --merge-base $base_sha $head_sha -- '*.tex' | tr '\n' ' ')
echo "changed=$changed" >> $GITHUB_ENV
echo "pdfs=$(ls -1 $changed | sed 's,^,new/,;s,tex$,pdf,' | tr '\n' ' ')" >> $GITHUB_ENV
echo "diffs=$(ls -1 $changed | sed 's,^,diff/,;s,tex$,pdf,' | tr '\n' ' ')" >> $GITHUB_ENV
echo "pr_number=$pr_number" > environ.txt
echo "base_sha=$base_sha" >> environ.txt
echo "head_sha=$head_sha" >> environ.txt
echo "mergebase_sha=$mergebase_sha" >> environ.txt
- name: Run LaTeX
uses: ./.github/actions/texlive
if: ${{ env.changed }}
with:
run1: make ${{ env.pdfs }}
run2: -make -k OLD=$mergebase_sha NEW=HEAD ${{ env.diffs }}
- uses: actions/upload-artifact@v3
with:
name: pdf
retention-days: 1
if-no-files-found: ignore
path: |
environ.txt
new/*.pdf
diff/*.pdf