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GUI for visualising graph extraction on skeletonised images.

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graph-extraction-gui

A GUI to visualise an NN-based graph extraction procedure applied to skeletonised endoscopic images.

Usage

  1. Install required packages (s. requirements.txt )
    e.g.
    pip install -r requirements.txt
    
    e.g. or in conda
    conda env create --file requirements.txt
    
  2. Run main.py

If using a remote interpreter

First set some variables before running.

  • Set the following environment variables (example)
    DISPLAY=localhost:10;LIBGL_ALWAYS_INDIRECT=1
    
  • Set the corresponding display number in the GUI viewer (e.g. VcXsrv)

Notes

  • Sample skeletonised images are provided in the img folder.
  • This GUI implementation is currently not optimised for GPU.