Updated severe mental illness code set

shared/clinical-code-sets/conditions/severe-mental-illness/1/README.md

@@ -8,9 +8,9 @@ Defined as any diagnosis of:
 
 or patients on the severe mental illness register.
 
-CTV3 code sets from OpenSafely.
+CTV3 code sets from OpenSafely and the NHS PCD refsets.
 
-SNOMED code set created from the following codes and all their descendants:
+SNOMED code set supplemented from the following codes and all their descendants:
 
 | SNOMED code | Description                                 |
 | ----------- | ------------------------------------------- |
@@ -25,8 +25,17 @@ By examining the prevalence of codes (number of patients with the code in their
 
 The discrepancy between the patients counted when using the IDs vs using the clinical codes is due to these being new codes which haven't all filtered through to the main Graphnet dictionary. The prevalence range `1.04% - 1.77%` is perhaps too wide suggesting there is an underreporting from TPP practices - or the CTV3 code set differs from the others.
 
+_Update **2024-03-15**: Prevalence now 1.14% - 1.18% which suggests it is now well defined._
+
 | Date       | Practice system | Population | Patients from ID | Patient from code |
 | ---------- | --------------- | ---------- | ---------------: | ----------------: |
 | 2021-03-11 | EMIS            | 2600658    |    46405 (1.78%) |     46081 (1.77%) |
 | 2021-03-11 | TPP             | 210333     |     2200 (1.05%) |      2196 (1.04%) |
 | 2021-03-11 | Vision          | 333251     |     6770 (2.03%) |      5338 (1.60%) |
+| 2024-03-15 | EMIS            | 2526522    |    44626 (1.77%) |     29709 (1.18%) |
+| 2024-03-15 | TPP             | 201758     |     2455 (1.22%) |      2294 (1.14%) |
+| 2024-03-15 | Vision          | 335186     |     5667 (1.69%) |      3830 (1.14%) |
+
+## Audit log
+
+- Find_missing_codes last run 2024-03-15

shared/clinical-code-sets/conditions/severe-mental-illness/1/severe-mental-illness.snomed.txt

@@ -590,4 +590,73 @@
 70814008	Subchronic residual schizophrenia with acute exacerbations (disorder)
 35218008	Chronic disorganized schizophrenia with acute exacerbations (disorder)
 79204003	Chronic undifferentiated schizophrenia with acute exacerbations (disorder)
-191563001	Acute exacerbation of subchronic latent schizophrenia (disorder)
+191563001	Acute exacerbation of subchronic latent schizophrenia (disorder)
+789061003	Rapid cycling bipolar II disorder (disorder)
+231496004	Hypomania (disorder)
+191593007	Recurrent manic episodes, moderate (disorder)
+47447001	Grandiose delusion disorder (disorder)
+33736005	Severe major depression with psychotic features, mood-congruent (disorder)
+1089681000000108	Mania with psychotic features (disorder)
+191562006	Chronic latent schizophrenia (disorder)
+755331000000108	Recurrent major depressive episodes, severe, with psychosis, psychosis in remission (disorder)
+60099002	Severe major depression with psychotic features, mood-incongruent (disorder)
+191559008	Latent schizophrenia (disorder)
+28475009	Severe recurrent major depression with psychotic features (disorder)
+723901004	Delusional disorder currently in full remission (disorder)
+191588009	Single manic episode in full remission (disorder)
+764641000000104	Single manic episode, severe (disorder)
+430852001	Severe major depression, single episode, with psychotic features (disorder)
+1127191000000108	First episode psychosis (finding)
+48500005	Delusional disorder (disorder)
+268619003	Manic disorder, single episode (disorder)
+16238741000119105	Bipolar disorder caused by drug (disorder)
+274952002	Borderline schizophrenia (disorder)
+191583000	Single manic episode, mild (disorder)
+764731000000103	Single manic episode in partial remission (disorder)
+15193003	Severe recurrent major depression with psychotic features, mood-incongruent (disorder)
+33323008	Somatic delusion disorder (disorder)
+33078009	Severe recurrent major depression with psychotic features, mood-congruent (disorder)
+723899008	Delusional disorder currently symptomatic (disorder)
+191586008	Single manic episode, severe, with psychosis (disorder)
+191565008	Latent schizophrenia in remission (disorder)
+764681000000107	Recurrent manic episodes, in remission (disorder)
+191677006	Acute hysterical psychosis (disorder)
+726772006	Major depression with psychotic features (disorder)
+191584006	Single manic episode, moderate (disorder)
+764741000000107	Single manic episode in remission (disorder)
+191590005	Recurrent manic episodes (disorder)
+191604000	Single major depressive episode, severe, with psychosis (disorder)
+723900003	Delusional disorder currently in partial remission (disorder)
+31027006	Schizotypal personality disorder (disorder)
+191672000	Paranoia querulans (disorder)
+231487004	Persistent delusional disorder (disorder)
+231485007	Post-schizophrenic depression (disorder)
+191613003	Recurrent major depressive episodes, severe, with psychosis (disorder)
+191561004	Subchronic latent schizophrenia (disorder)
+1089511000000100	Recurrent depression with current severe episode and psychotic features (disorder)
+698951002	Delusional disorder in remission (disorder)
+755321000000106	Single major depressive episode, severe, with psychosis, psychosis in remission (disorder)
+191564007	Acute exacerbation of chronic latent schizophrenia (disorder)
+60123008	Delusional disorder, mixed type (disorder)
+191670008	Shared paranoid disorder (disorder)
+41932008	Amok (disorder)
+231494001	Mania (disorder)
+1089671000000106	Mania with mood-incongruent psychotic features (disorder)
+191595000	Recurrent manic episodes, severe, with psychosis (disorder)
+231495000	Manic stupor (disorder)
+191667009	Paranoid disorder (disorder)
+1089661000000104	Mania with mood-congruent psychotic features (disorder)
+191592002	Recurrent manic episodes, mild (disorder)
+764621000000106	Recurrent manic episodes, severe (disorder)
+191668004	Simple paranoid state (disorder)
+268622001	Chronic paranoid psychosis (disorder)
+77911002	Severe major depression, single episode, with psychotic features, mood-congruent (disorder)
+764671000000105	Recurrent manic episodes, in partial remission (disorder)
+191658009	Atypical manic disorder (disorder)
+417601000000102	[X]Schizophrenia, schizotypal and delusional disorders (disorder)
+191597008	Recurrent manic episodes, in full remission (disorder)
+755301000000102	Paranoid state in remission (disorder)
+307504004	Oneirophrenia (finding)
+20250007	Severe major depression, single episode, with psychotic features, mood-incongruent (disorder)
+73867007	Severe major depression with psychotic features (disorder)
+278506006	Involutional paranoid state (disorder)