chore(master): release 0.41.0

CHANGELOG.md

@@ -2,6 +2,59 @@
 All notable changes to this project will be documented in this file.
 This project adheres to [Semantic Versioning](http://semver.org/).
 
+## [0.41.0](https://github.com/rust-bio/rust-htslib/compare/v2.0.3...v0.41.0) (2023-03-02)
+
+
+### ⚠ BREAKING CHANGES
+
+* dummy major version bump to move away from previous versions that were following htslib versions.
+* bump to new major version (for technical reasons).
+* dummy breaking change to increase hts-sys major version.
+* Improve bcf Record filter interface and improve docs ([#306](https://github.com/rust-bio/rust-htslib/issues/306))
+
+### Features
+
+* add musl target support ([#111](https://github.com/rust-bio/rust-htslib/issues/111)) ([1f9736e](https://github.com/rust-bio/rust-htslib/commit/1f9736ef108762e919802b3d78e22e47533c122c))
+* Add wrapper of BGZF writer ([#349](https://github.com/rust-bio/rust-htslib/issues/349)) ([965ed88](https://github.com/rust-bio/rust-htslib/commit/965ed886a0c24ee3070e48cc192c0772ac5cbaf4))
+* Improve bcf Record filter interface and improve docs ([#306](https://github.com/rust-bio/rust-htslib/issues/306)) ([f45e91d](https://github.com/rust-bio/rust-htslib/commit/f45e91dfdc64ecb662d676f2996ed4f14c079995))
+* Revised calculation of leading- and trailing-softclips ([#375](https://github.com/rust-bio/rust-htslib/issues/375)) ([b61dd2c](https://github.com/rust-bio/rust-htslib/commit/b61dd2cfb2b74c0180f2d76bbd4ed4eb14fa09b3))
+
+
+### Bug Fixes
+
+* add ID to automatic release handling ([1244393](https://github.com/rust-bio/rust-htslib/commit/124439300e1e3e01e1d847f7549747d560c01989))
+* bump hts-sys version to 2.0.1 ([336c8b8](https://github.com/rust-bio/rust-htslib/commit/336c8b8a1779422afea1065e37bcc44f54abac42))
+* bump to new major version (for technical reasons). ([9c6db30](https://github.com/rust-bio/rust-htslib/commit/9c6db3060818692070db1411d63e113dc7effd64))
+* change the type to c_char so it can be compiled for aarch64 ([#337](https://github.com/rust-bio/rust-htslib/issues/337)) ([a21aff2](https://github.com/rust-bio/rust-htslib/commit/a21aff289bc03c7549afc7a958084ed57e8c93f2))
+* Configuration when cross-compiling. Even when cross-compiling, build.rs runs on the build host. Hence within build.rs `#[cfg(target_os)]` always reflects the host, not the target. Use $CARGO_CFG_TARGET_OS instead to query target properties. ([#329](https://github.com/rust-bio/rust-htslib/issues/329)) ([d5198e6](https://github.com/rust-bio/rust-htslib/commit/d5198e6c777fdbbfdd9c73a820f1be983a458ce2))
+* do not use ret for limiting integer and float arrays coming from yinfo tag ([47126ab](https://github.com/rust-bio/rust-htslib/commit/47126ab69e26616df1d401ee11423e150e118e0c))
+* dummy breaking change to increase hts-sys major version. ([93415cb](https://github.com/rust-bio/rust-htslib/commit/93415cbb82e4f11d257a2b2cedba2664f86a034d))
+* dummy changes ([3af5ede](https://github.com/rust-bio/rust-htslib/commit/3af5ede13a6b44ce5d1e7f0eb90836a692e711ec))
+* dummy fix for triggering release ([e92e6b1](https://github.com/rust-bio/rust-htslib/commit/e92e6b10b0a7e5db50b12e2fbe2c42b467eb369e))
+* dummy major version bump to move away from previous versions that were following htslib versions. ([aaa70a8](https://github.com/rust-bio/rust-htslib/commit/aaa70a85ef9a908d3b101f23879189e84a15d23f))
+* dummy release ([74d1565](https://github.com/rust-bio/rust-htslib/commit/74d1565329fc862f1172c0925c7b66ceb8bcf988))
+* dummy release ([af2f84e](https://github.com/rust-bio/rust-htslib/commit/af2f84eb0411507f8866b3cc05e9a6ba9d81d172))
+* dummy release ([b97915f](https://github.com/rust-bio/rust-htslib/commit/b97915f2c70da4c914f2e69861bf78eec5979baf))
+* enum name usage in doc example ([#311](https://github.com/rust-bio/rust-htslib/issues/311)) ([6e9ba49](https://github.com/rust-bio/rust-htslib/commit/6e9ba4928b60c3105490a8179d074c705ea06fd7))
+* handle subcrate with release-please ([0a4605f](https://github.com/rust-bio/rust-htslib/commit/0a4605f165cb2edf4428d8fb39f7e4787585f4e1))
+* Header::to_hashmap skips `@CO` tags, add `comments()`  method ([#363](https://github.com/rust-bio/rust-htslib/issues/363)) ([c24a7f6](https://github.com/rust-bio/rust-htslib/commit/c24a7f69fbe5d2db4a6f1fbd6eda3922fe7f1c18))
+* improved documentation ([cb0b66c](https://github.com/rust-bio/rust-htslib/commit/cb0b66c4a92d4f03debe38dfb2a014b154c7dd96))
+* perform checkout before running release please ([cbc6a0a](https://github.com/rust-bio/rust-htslib/commit/cbc6a0ad37c5623d14f2ed0bcbb4c5289d012fcb))
+* set path in release-please config ([d8f7c6e](https://github.com/rust-bio/rust-htslib/commit/d8f7c6e8f31accb7576e150fa1439e177f7816cb))
+* trigger dummy release ([7c5a7de](https://github.com/rust-bio/rust-htslib/commit/7c5a7de33e2a92052126e5f44389d421974d1e02))
+* update changelog ([deef08f](https://github.com/rust-bio/rust-htslib/commit/deef08feb0b5ba2d8abf98f2cc6d327236da8aef))
+* update to latest release-please ([b130634](https://github.com/rust-bio/rust-htslib/commit/b130634b3d096e620dcfe59acae2200df3e4d847))
+
+
+### Performance Improvements
+
+* update htslib and corresponding bindings to 1.16 ([#366](https://github.com/rust-bio/rust-htslib/issues/366)) ([f597ce0](https://github.com/rust-bio/rust-htslib/commit/f597ce0451e3f3c393166a7291486bbc2bde4c39))
+
+
+### Miscellaneous Chores
+
+* release 0.41.0 ([115d5e3](https://github.com/rust-bio/rust-htslib/commit/115d5e3a2c7ebc0dd6e5b67378843309dcf72cf0))
+
 ## [0.40.2](https://github.com/rust-bio/rust-htslib/compare/rust-htslib-v0.40.1...rust-htslib-v0.40.2) (2022-10-13)
 
 

Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "rust-htslib"
-version = "0.40.2"
+version = "0.41.0"
 authors = ["Christopher Schröder <christopher.schroeder@tu-dortmund.de>", "Johannes Köster <johannes.koester@tu-dortmund.de>"]
 description = "This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files."
 readme = "README.md"
@@ -31,7 +31,7 @@ serde = { version = "^1", optional = true, features=["derive"] }
 serde_bytes = { version = "0.11", optional = true }
 bio-types = ">=0.9"
 thiserror = "1"
-hts-sys = { version = "2.0.3", path = "hts-sys", default-features = false }
+hts-sys = { version = "0.41.0", path = "hts-sys", default-features = false }
 derive-new = "0.5"
 ieee754 = "0.2"
 byteorder = "1.3"

hts-sys/Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "hts-sys"
-version = "2.0.3"
+version = "0.41.0"
 authors = ["Christopher Schröder <christopher.schroeder@tu-dortmund.de>", "Johannes Köster <johannes.koester@tu-dortmund.de>"]
 build = "build.rs"
 links = "hts"