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Scripts developed to work with 10x Genomics sequencing results

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10x_genomics_tools

gemcode_scatter_plots_from_loupe_server.R

  • iterates over a set of samples
  • pulls values from Loupe Server for matrix view of gem code overlaps for the given region
    • by default, requests numbers with "expected values" masked off
  • plots the matrix for 6 samples per page in PDF using Loupe color scheme.

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Scripts developed to work with 10x Genomics sequencing results

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