Pinned

1. HeatSeq HeatSeq Public

   Cluster munitions for microbial genomic sequence data

   Python 2

2. F100_Prok_Recombination F100_Prok_Recombination Public

   Repository for F100 method of prokaryote recombination analysis

   Python 1

3. 00_in-situ_GeneCoverage 00_in-situ_GeneCoverage Public

   Workflow to calculate ANIr and sequence coverage (depth and breadth) of genome(s) / MAG(s) from metagenomes by gene, intergenic region, contig, and whole genome.

   Python 4 2

4. 00_Contig_Synteny 00_Contig_Synteny Public

   Build Gene Arrow Plot for Contig Synteny Across Multiple Contigs

   Python 2

5. EggNog_Annotation_Plots EggNog_Annotation_Plots Public

   Create stack bar plots and perform chi2 tests from EggNog Mapper annotations file.

   Python

6. Kraken-Bracken-plot Kraken-Bracken-plot Public

   Creates stacked bar plots from Kracken and Bracken output.

   Python