Data, sequence analysis ploting for figures included in the paper: Wieler, N., Ginat, H., Gillor, O. and Angel, R.: The origin and role of biological rock crusts in rocky desert weathering, Biogeosciences, 16(6), 1133–1145, doi:https://doi.org/10.5194/bg-16-1133-2019, 2019. .
├── Data # Primary data
│ ├── desiccation_data_full.csv
│ ├── Isotopes_data.csv
│ ├── Rock_weathering_metadata_RA.csv
│ ├── Rock_weathering_new2_otuTab.txt
│ └── Rock_weathering_new2_silva.nrv119.taxonomy
├── LICENCE # Copyright information
├── packrat.tgz # R packages needed by the RMD file (available upon request)
├── README.md # Overview of the repo
├── references.bib # Bibtex formatted refereces cited in the RMD file
├── Results # Result files generated while running the RMD file
│ ├── Rock_weathering_Diversity.csv
│ ├── Rock_weathering_Diversity.Rds
│ ├── Rock_weathering_filt3_GMPR_Order_CI.csv
│ ├── Rock_weathering_filt3_GMPR_Order_Pvals.csv
│ ├── Rock_weathering_filt3_GMPR_Phylum_CI.csv
│ ├── Rock_weathering_filt3_GMPR_Phylum_Pvals.csv
│ ├── Rock_weathering_Richness.csv
│ └── Rock_weathering_Richness.Rds
├── Rock_wathering_analysis_files.Rproj # R project file
├── Rock_weathering_analysis4paper.html # HTML output of the RMD file
├── Rock_weathering_analysis4paper.md # MD output of the RMD file
├── Rock_weathering_analysis4paper.RMD # Executable R markdown script
├── Rock_weathering_figures/ # Figure files generated while running the RMD file
└── Rock_weathering_process_sequences.sh # Shell excecutable for processing the sequence data
The RMD file is best executed using knitr on RStudio. The packrat folder holds the specific package versions used for the analysis.