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centromeres setting #342

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tan5251 opened this issue Jan 18, 2024 · 1 comment
Open

centromeres setting #342

tan5251 opened this issue Jan 18, 2024 · 1 comment

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@tan5251
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tan5251 commented Jan 18, 2024

My species is pig that not annotated with centromeres information.
My code is :
EDL <- load_contacts(signal_path ='../../hic_files/EDL.juicer.1.0.hic',resolution = 50000,sample_name = "EDL",balancing = "T",colour = "black",centromeres = FALSE)
error:
Error in names(object) <- nm :
'names' attribute [3] must be the same length as the vector [1]

But
EDL <- load_contacts(signal_path ='../../hic_files/EDL.juicer.1.0.hic',resolution = 50000,sample_name = "EDL",balancing = "T",colour = "black")
it can works.

Any suggestions? Thanks!

@Datacond
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Datacond commented Apr 6, 2024

Hi, @tan5251

Did you solve the problem in the end?
Adding centromeres = FALSE:

'names' attribute [3] must be the same length as the vector [1]

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