xReg Wiki Big Files

This repository houses some large files (resampled CT volumes) created as part of the xReg walkthrough. The files are most easily accessed via the releases section.

• All of the non-derived data in the xReg walkthrough was obtained from The Cancer Imaging Archive (TCIA):
  • Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. (link)
• The lymph.nii.gz and ABD_LYMPH_001_00.nii.gz volumes were created using the TCIA "Lymph Nodes" dataset:
  • Holger, Roth, Lu, Le, Seff, Ari, Cherry, Kevin M, Hoffman, Joanne, Wang, Shijun, … Summers, Ronald M. (2015). A new 2.5 D representation for lymph node detection in CT. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2015.AQIIDCNM
  • Roth, Holger R and Lu, Le and Seff, Ari and Cherry, Kevin M and Hoffman, Joanne and Wang, Shijun and Liu, Jiamin and Turkbey, Evrim and Summers, Ronald M. A new 2.5 D representation for lymph node detection using random sets of deep convolutional neural network observations. Medical Image Computing and Computer-Assisted Intervention--MICCAI 2014, p520-527, 2014. (link)
  • Seff, Ari and Lu, Le and Cherry, Kevin M and Roth, Holger R and Liu, Jiamin and Wang, Shijun and Hoffman, Joanne and Turkbey, Evrim B and Summers, Ronald M. 2D view aggregation for lymph node detection using a shallow hierarchy of linear classifiers. Medical Image Computing and Computer-Assisted Intervention--MICCAI 2014, p544-552, 2014. (link)
• The head.nii.gz and 0522c0012_00.nii.gz volumes were created using the TCIA "Head-Neck Cetuximab" dataset:
  • Bosch, Walter R., Straube, William L., Matthews, John W., & Purdy, James A. (2015). Data From Head-Neck_Cetuximab. The Cancer Imaging Archive. http://doi.org/10.7937/K9/TCIA.2015.7AKGJUPZ
• The Pelvic-Ref-007_00.nii.gz volume was created using the TCIA "Pelvic Reference" dataset:
  • Afua A. Yorke, Gary C. McDonald, David Solis Jr., Thomas Guerrero. (2019) Pelvic Reference Data. The Cancer Imaging Archive. DOI: 10.7937/TCIA.2019.woskq5oo
  • Yorke A, McDonald GC, Solis Jr. D, Guerrero T. A Statistically Characterized Reference Data Set for Image Registration of Pelvis Using Combinatorial Rigid Registration Registration Optimization (CORRO).