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30 Open 69 Closed
30 Open 69 Closed
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Issues list

add a function to average columns of a SummarizedExperiment
#215 opened May 14, 2024 by jorainer
@philouail
9
QFeatures API
#214 opened May 13, 2024 by lgatto
@lgatto @cvanderaa
2
readQFeatures no longer supports reading from a .txt file
#213 opened May 8, 2024 by lmsimp
6
Rethinking colData management when adding or extracting sets
#212 opened Apr 26, 2024 by cvanderaa
2
Streamline assay joining with joinAssays()
#211 opened Apr 24, 2024 by cvanderaa
Improve addAssayLink() documentation
#209 opened Apr 11, 2024 by cvanderaa
@cvanderaa
Create vignette for readQFeatures() and co
#206 opened Apr 9, 2024 by cvanderaa
@cvanderaa
.formatMtraqReportData() improvements
#204 opened Apr 8, 2024 by lgatto
accessor for "sets/experiments" for easier piping
#197 opened Dec 13, 2023 by tavareshugo
7
longFormat for SE with rowvars
#196 opened Nov 30, 2023 by lgatto
@cvanderaa
1
All QFeatures functions should add assays?
#193 opened Sep 6, 2023 by cvanderaa
2 tasks
4
Improve sweep for multiple assays?
#192 opened Aug 25, 2023 by cvanderaa
Feature: automatic identification/labelling of contaminant peptides
#191 opened Aug 25, 2023 by cvanderaa
Feature request: aggregate by sample (i.e. column) enhancement New feature or request
#188 opened May 18, 2023 by csdaw
@cvanderaa
3
Refactor: QFeatures subsetting
#186 opened Apr 18, 2023 by cvanderaa
@cvanderaa
1
feature request: conditional filtering of missing values
#182 opened Jan 15, 2023 by KristinaGomoryova
8
Bug in nNA()
#174 opened Oct 11, 2022 by cvanderaa
@cvanderaa
feature request: filterNA() by column/sample
#173 opened Oct 4, 2022 by cvanderaa
@cvanderaa
1
feat: support an HDF5 backend for on-disk memory
#171 opened Sep 6, 2022 by cvanderaa
@cvanderaa
1
Create QFeatures object from any sets of features/peptides/proteins tables
#164 opened Jun 17, 2022 by annaquaglieri16
Enforcing adjacency matrix validity
#160 opened Feb 8, 2022 by lgatto
@lgatto
Address message about possible inefficient code
#156 opened Dec 9, 2021 by lgatto
@lgatto
Feature request: improve missing data handling
#149 opened Jul 30, 2021 by cvanderaa
1 of 3 tasks
Feature request: include functionality for spike-ins
#148 opened Jul 30, 2021 by cvanderaa
3 tasks
feature request: set values below a threshold as NA
#135 opened Jun 16, 2021 by cvanderaa
1
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