racpy

RNASeq Age Calculation in Python

• Free software: MIT license
• Documentation: https://racpy.readthedocs.io.

Features

This is the Python verion of our proposed multi-tissue transcriptional age calculator.

• The RNAAgeCalc paper can be found here https://doi.org/10.1371/journal.pone.0237006.
• The Python package can be found here https://pypi.org/project/racpy.
• The Python package documentation can be found here https://racpy.readthedocs.io.
• An interactive Shiny App can be found here https://xuren2120.shinyapps.io/RNAAgeCalcshiny/.
• The Shiny App demo can be found here http://www.ams.sunysb.edu/~pfkuan/RNAAgeCalc/instructions.html.
• The R version can be found here https://bioconductor.org/packages/release/bioc/html/RNAAgeCalc.html.

Authors

• Xu Ren <xuren2120@gmail.com>
• Pei Fen Kuan <peifen.kuan@stonybrook.edu>

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

Dependencies scanned by PyUp.io

Citation

Ren, X., & Kuan, P. F. (2020). RNAAgeCalc: A multi-tissue transcriptional age calculator. PloS one, 15(8), e0237006.

@article{ren2020rnaagecalc,
title={RNAAgeCalc: A multi-tissue transcriptional age calculator},
author={Ren, Xu and Kuan, Pei-Fen},
journal={PLOS ONE},
volume={15},
number={8},
pages={1-21},
year={2020},
publisher={Public Library of Science}
}