GitHub - rdpstaff/ReadSeq: Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.

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Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.

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Name		Name	Last commit message	Last commit date
Latest commit History 39 Commits
nbproject		nbproject
src		src
test		test
.gitignore		.gitignore
LICENSE		LICENSE
README		README
build.xml		build.xml
ivy.xml		ivy.xml
ivysettings.xml		ivysettings.xml
manifest.mf		manifest.mf

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Quickstart
==========
ant jar
java -jar dist/ReadSeq.jar

Description
============
Sequence reading library developed by the Ribosomal Database Project.  Can handle genbank, embl, fasta, fastq, sff and sto files.  Can read from files or streams, and can handle indexing files.

USAGE: ReadSeqMain <subcommand> <subcommand args ...>
	random-sample  - random select a subset or subregion of sequences
	reverse-comp   - reverse complement sequences 
	rm-dupseq      - remove identical or substring of sequences
	select-seqs    - select or deselect sequences from a file
	split          - split sequences
	to-fasta       - convert to fasta format
	to-fastq       - convert to fastq format