This repository contains all new results reported in the HATCHet2 publication (in review):
10x: results on the 10x CNV kit 5-sample breast tumor datasetgundem: results on the Gundem et al., 2015 multi-sample metastatic prostate cancer dataset (10 patients, 50 samples)mascote-multisample: results on MASCoTE simulated data that accompanied the original HATCHet publication (8 datasets, 32 samples)mascote-singlesample: results on MASCoTE simulated data as previous, but treating each sample as an independent dataset (32 datasets, 32 samples)mirrored-simulations: results on new simulated data featuring a high prevalence (20-30% of the genome) of mirrored-subclonal CNAs (150 datasets, 350 samples)purity-simulations: results on new simulated data featuring a range of tumor purities (191 datasets)
Code used to generate new simulated data is available in the hatchet2-simulations repository -- purity and mirrored simulations are indicated as separate releases.