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50 Open 77 Closed
50 Open 77 Closed
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Issues list

add flag and make GC correction optional
#217 opened Apr 18, 2024 by mmyers1
explore using more recent SHAPEIT version
#214 opened Apr 10, 2024 by mmyers1
resolve issue with CI testing python 3.7
#213 opened Apr 6, 2024 by mmyers1
Length of values does not match length of index
#209 opened Mar 11, 2024 by tyamaguchi-ucla
String "None" is not converted to Python None object in parse_combine_counts_args
#208 opened Mar 1, 2024 by tyamaguchi-ucla
HATCHet2 RDR/BAF locally-aware clustering error with sparse bins
#206 opened Feb 8, 2024 by aganezov
can i ues this method for checking WGD of other species
#205 opened Jan 15, 2024 by WJT0925
Set default value for ILP time limit
#204 opened Jan 11, 2024 by mmyers1
Specifying size for WES samples in count-reads
#199 opened Nov 20, 2023 by bjlerman
1
Error when no reads are recorded in tumor.bed before/after centromere location
#198 opened Nov 14, 2023 by ronkesm
Error in plot_clusters() in plot_cn_1d2d.py due to change in pandas df.groupby()
#197 opened Nov 2, 2023 by BramLimSJ
Error in read_bb() in cluster_bins.py due to change in pandas df.groupby()
#196 opened Oct 31, 2023 by BramLimSJ
4
Full documentation is not in fact available from cs.brown.edu
#195 opened Oct 18, 2023 by ttriche
3
Failed to liftover chromosomes with picard
#192 opened Jul 22, 2023 by tahashmi
Running HATCHet with phasing
#191 opened Jul 8, 2023 by um-pdavila
Download 1000GP_Phase3
#190 opened Jun 9, 2023 by yqkiuo
Falling at plot-bin step, even after adjusting -tR and -tB
#189 opened Jun 2, 2023 by immuneAI
tabix parse error and cluster-bins failure
#188 opened May 31, 2023 by csmoreno
4
Phasing fails
#187 opened May 3, 2023 by csmoreno
Convert count-reads output files to tabular format
#186 opened Apr 26, 2023 by mmyers1
msr and mtr cannot be changed
#185 opened Apr 25, 2023 by JenniferNeumaier
1
count() got an unexpected keyword argument 'stop'
#184 opened Mar 23, 2023 by csmoreno
How can I download HATCHet v1.2.1 instead of v1.1.1?
#183 opened Feb 22, 2023 by goldpm1
minK is not always enforced strictly for large K
#182 opened Dec 29, 2022 by mmyers1
non-human genome
#179 opened Dec 15, 2022 by gbnci
1
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