Pinned
Repositories
- Webservices-tester Public
A test script to check operational status of various webservices used in our questionnaires. Triggered daily using GitHub Actions.
- QMP-Microbiome-CRC-confounders Public
Scripts for the manuscript "Microbiome confounders and quantitative profiling challenge established microbial targets in colorectal cancer developmental stages"
- Enterotype-prediction-based-on-the-life-history Public
Machine learning classification pipe-line used for the study "Long-term life history predicts current elderly gut microbiome"
- covid19_respiratory_microbiome Public
Code accompanying the manuscript "Clinical practices underlie COVID-19 patient respiratory microbiome composition and its interactions with the host"
- benchmark_microbiome_transformations Public Forked from vllorens/benchmark_microbiome_transformations
Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"