Ctesi is a project meant to simplify processing and quantification of chemoproteomic mass spectrometry data in the Cravatt lab. The following are automated:
- Conversion of
.rawfiles to.ms2andmzXMLformats - Submission to an instance of IP2 maintained at The Scripps Research Institute
- Quantification of data with in-house software (cimage)
Ctesi requires a copy of the cimage-minimal project, to be placed alongside it.
On development instances you must create a file config/secrets.override.yml. This will by default not be entered into version control. It must contain credentials for accessing Active Directory. There is an example file in config/secrets.yml.
You must also mount an NFS share that is accessible by a cravatt-rawprocessor (not included here) instance. An example mount commmand is included in config/mount-nfs.example.sh. This command must be issued with root privileges.