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Install pak into the system library in the webR development Docker … #379

Install pak into the system library in the webR development Docker …

Install pak into the system library in the webR development Docker … #379

Workflow file for this run

name: Build, test and deploy webR
on:
push:
branches:
- "main"
tags:
- "v*.*"
workflow_dispatch:
jobs:
build:
name: Build webR
runs-on: ubuntu-latest
container: ghcr.io/r-wasm/flang-wasm:main
steps:
- uses: actions/checkout@v4
- uses: actions/setup-node@v4
with:
node-version: '20'
registry-url: 'https://registry.npmjs.org'
- name: Set npm dist-tag to "next" if pre-release version
if: contains(github.ref_name, '-dev') || contains(github.ref_name, '-rc')
run: echo "DIST_TAG=next" >> $GITHUB_ENV
- name: Install required system packages
run: apt-get update && apt-get install -y gh jq sudo
- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true
- uses: quarto-dev/quarto-actions/setup@v2
- name: Install required R packages for building documentation
run: Rscript -e 'install.packages(c("rmarkdown", "rvest"))'
- name: Configure webR for flang
env:
EMFC: /opt/flang/host/bin/flang-new
run: ./configure
- name: Setup Emscripten PATH
run: echo "/opt/emsdk:/opt/emsdk/upstream/emscripten" >> $GITHUB_PATH
- name: Set Emscripten EM_NODE_JS
run: echo "EM_NODE_JS=$(which node)" >> $GITHUB_ENV
- name: Set the webR CDN URL as the BASE_URL
run: echo "BASE_URL=https://webr.r-wasm.org/${{ github.ref_name }}/" > "$HOME/.webr-config.mk"
shell: bash
- name: Set versioning for main
if: "contains(github.ref_name, 'main')"
run: |
SHA="${{github.event.pull_request.head.sha}}${{ github.sha }}"
SHORT_SHA=${SHA:0:7}
VER=$(node -p "require('./src/package.json').version")
echo "version: ${VER}+${SHORT_SHA}"
echo "WEBR_VERSION=${VER}+${SHORT_SHA}" >> "$HOME/.webr-config.mk"
echo "WEBR_VERSION_TAG=latest" >> "$HOME/.webr-config.mk"
shell: bash
- name: Set versioning for tag
if: "!contains(github.ref_name, 'main')"
run: |
VER=$(node -p "require('./src/package.json').version")
echo "version: ${VER}"
echo "WEBR_VERSION=${VER}" >> "$HOME/.webr-config.mk"
echo "WEBR_VERSION_TAG=${{ github.ref_name }}" >> "$HOME/.webr-config.mk"
shell: bash
- name: Build all optional wasm libs
env:
EMSDK: /opt/emsdk
run: cd libs && make all
- name: Build webR
env:
EMSDK: /opt/emsdk
run: make && make check-pr
shell: bash
- name: Build webR documentation
run: cd src/docs && make
shell: bash
- name: Publish to npm
if: "!contains(github.ref_name, 'main')"
env:
NODE_AUTH_TOKEN: ${{ secrets.NPM_TOKEN }}
run: cd src && make publish
- name: Workaround for codecov/feedback#263
run: git config --global --add safe.directory "$GITHUB_WORKSPACE"
- name: Report code coverage
uses: codecov/codecov-action@v4
with:
files: src/coverage/lcov.info
flags: unittests
name: codecov-webr
fail_ci_if_error: true
verbose: true
token: ${{ secrets.CC_TOKEN }}
- name: Archive webR build artifacts
uses: actions/upload-artifact@v3
with:
name: webr-dist
path: |
dist
- name: Archive webR documentation artifacts
uses: actions/upload-artifact@v3
with:
name: webr-docs
path: |
src/docs/_site
deploy:
name: Deploy webR to S3
needs: build
runs-on: ubuntu-latest
environment: deploy
permissions:
id-token: write
contents: read
steps:
- name: Download build archive
uses: actions/download-artifact@v3
with:
name: webr-dist
- name: Configure AWS credentials
uses: aws-actions/configure-aws-credentials@v4
with:
role-to-assume: ${{ secrets.AWS_ROLE }}
aws-region: ${{ secrets.AWS_REGION }}
- name: Upload files to S3 bucket
run: |
aws s3 sync . s3://${{ secrets.AWS_S3_BUCKET }}/_webr/${{ github.ref_name }}/
aws s3 cp --exclude "*" --include "*.data" --include "*.so" --recursive \
--content-type="application/wasm" --metadata-directive="REPLACE" \
s3://${{ secrets.AWS_S3_BUCKET }}/_webr/${{ github.ref_name }}/ \
s3://${{ secrets.AWS_S3_BUCKET }}/_webr/${{ github.ref_name }}/
aws cloudfront create-invalidation --distribution-id \
${{ secrets.AWS_CLOUDFRONT_DISTRIBUTION_ID }} --paths "/latest/*" \
"/${{ github.ref_name }}/*"
deploy_docs:
name: Deploy webR documentation to S3
needs: build
runs-on: ubuntu-latest
environment: deploy
permissions:
id-token: write
contents: read
steps:
- name: Download docs archive
uses: actions/download-artifact@v3
with:
name: webr-docs
- name: Configure AWS credentials
uses: aws-actions/configure-aws-credentials@v4
with:
role-to-assume: ${{ secrets.AWS_ROLE }}
aws-region: ${{ secrets.AWS_REGION }}
- name: Upload files to S3 bucket
run: |
aws s3 sync . s3://${{ secrets.AWS_S3_BUCKET }}/_docs/webr/${{ github.ref_name }}/
build_docker:
name: Build Docker image
runs-on: ubuntu-latest
permissions:
contents: read
packages: write
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Log in to the GitHub Container registry
uses: docker/login-action@v3
with:
registry: ghcr.io
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Extract metadata for Docker
id: meta
uses: docker/metadata-action@v5
with:
images: ghcr.io/${{ github.repository }}
- name: Short commit SHA
id: short
run: |
SHA="${{github.event.pull_request.head.sha}}${{ github.sha }}"
SHORT_SHA=${SHA:0:7}
echo "sha: $SHORT_SHA"
echo "sha=$SHORT_SHA" >> $GITHUB_OUTPUT
- name: Build and publish Docker image
uses: docker/build-push-action@v5
with:
context: .
push: true
build-args: |
WEBRCI_SHA=${{ steps.short.outputs.sha }}
MAKE_LIBS_TARGET=all
tags: ${{ steps.meta.outputs.tags }}
labels: ${{ steps.meta.outputs.labels }}
build-nix:
name: Build Nix flake
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: DeterminateSystems/nix-installer-action@main
with:
extra-conf: "sandbox = false"
- uses: DeterminateSystems/magic-nix-cache-action@main
- name: Build Nix package
run: nix build --print-build-logs