CRAN-like R package repositories for R-hub

These repositories are experimental. They are not compatible with install.packages(), only with pak.

• Ubuntu 22.04 + R-devel
• Ubuntu 22.04 + R-devel + libc++
• Fedora 38 + R-devel
• Ubuntu 22.04 + R-release on aarch64
• macOS 11 Big Sur or later, x86_64 + R-devel
• macOS 11 Big Sur or later, arm64 + R-devel

Can use PPPM:

• ubuntu-next (CRAN's r-patched-linux-x86_64)
• ubuntu-release (CRAN's r-release-linux-x86_64)

Ubuntu 22.04 + R-devel (ubuntu-22.04-R4.5)

Setup

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/ubuntu-22.04/4.5",
  CRAN = "https://cloud.r-project.org"
))

Containers using this repo

• ubuntu-clang (CRAN's r-devel-linux-x86_64-debian-clang)
• ubuntu-gcc12 (CRAN's r-devel-linux-x86_64-debian-gcc)
• ubuntu-gcc (CRAN's r-devel-linux-x86_64-fedora-gcc)
• nold (extra noLD)
• c23 (extra C23)
• lto (extra LTO)
• donttest (extra donttest)
• gcc-asan (extra gcc-ASAN and gcc-UBSAN)
• noomp (extra noOMP)
• rcnst (extra rcnst)
• rlibro (extra rlibro)

Ubuntu 22.04 + R-devel + libc++ (ubuntu-22.04-R4.5-libc++)

Setup

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/ubuntu-22.04/4.5/libc++",
  CRAN = "https://cloud.r-project.org"
))

Containers using this repo

• clang-asan (extra clang-ASAN and clang-UBSAN)
• clang16
• clang17
• clang18
• ubuntu-libc++ (CRAN's r-devel-linux-x86_64-fedora-clang)

Ubuntu 22.04 + R-devel + no shared lib ubuntu-22.04-R4.5-noshlib

ALthough we can potentially use packages that were built with a shared R lib, by removing the linkage after installation. The repository is not implemeneted yet.

Containers using this repo

• rchk (extra rchk)

Fedora 38 + R-devel (fedora-38-R4.5)

Setup

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/fedora-38/4.5",
  CRAN = "https://cloud.r-project.org"
))

Containers using this repo

• atlas (extra ATLAS)
• gcc13 (extra gcc13)
• intel (extra Intel)
• mkl (extra MKL)
• openblas (extra OpenBLAS)
• nosuggests (extra noSuggests)
• valgrind (extra valgrind)

Ubuntu 22.04 + R-release on aarch64 (ubuntu-22.04-aarch64-R4.4)

Setup

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/ubuntu-22.04-aarch64/4.4",
  CRAN = "https://cloud.r-project.org"
))

macOS 11 Big Sur or later, x86_64 + R-devel (macos-x86_64-R4.5)

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/macos-x86_64/4.5",
  CRAN = "https://cloud.r-project.org"
))

macOS 11 Big Sur or later, arm64 + R-devel (macos-arm64-R4.5)

options(repos = c(
  RHUB = "https://raw.githubusercontent.com/r-hub/repos/main/macos-arm64/4.5",
  CRAN = "https://cloud.r-project.org"
))

Not needed?

We probably do not need to create containers for these CRAN platforms:

• extra BLAS
• extra gcc11
• extra gcc12

Not possible (= very hard) currently

We practically cannot implement this platform currently:

• m1mac (extra M1mac)

By CRAN container

CRAN Package Check Flavors

Name	CRAN	✓	Repo
ubuntu-clang	r-devel-linux-x86_64-debian-clang	✓	ubuntu-22.04-R4.5
ubuntu-gcc12	r-devel-linux-x86_64-debian-gcc	✓	ubuntu-22.04-R4.5
ubuntu-libc++	r-devel-linux-x86_64-fedora-clang		ubuntu-22.04-R4.5-libc++
fedora-gcc	r-devel-linux-x86_64-fedora-gcc		fedora-38-R4.5
windows	r-devel-windows-x86_64	✓	CRAN
ubuntu-next	r-patched-linux-x86_64	✓	PPM
ubuntu-release	r-release-linux-x86_64	✓	PPM
macos-arm64	r-release-macos-arm64	✓	CRAN
macos	r-release-macos-x86_64	✓	CRAN
windows	r-release-windows-x86_64	✓	CRAN
macos-arm64	r-oldrel-macos-arm64	✓	CRAN
windows	r-oldrel-windows-x86_64	✓	CRAN

CRAN Package Check Issue Kinds

Name	CRAN	✓	Repo	Description
atlas	ATLAS	✓	fedora-38-R4.5	Tests with alternative BLAS/LAPACK implementations
blas	BLAS`			Use of BLAS/LAPACK from C/C++ code
c23	C23		ubuntu-22.04-R4.5	Checks of compiling C code in C23 mode
intel	Intel	✓	fedora-38-R4.5	Checks with Intel oneAPI 2023.x compilers
lto	LTO		ubuntu-22.04-R4.5	Tests for link-time optimization type mismatches
m1mac	M1mac		CRAN?	Checks on a M1 (arm64) Mac
mkl	MKL	✓	fedora-38-R4.5	Tests with alternative BLAS/LAPACK implementations
openblas	OpenBLAS		fedora-38-R4.5	Tests with alternative BLAS/LAPACK implementations
clang-asan	clang-ASAN	✓	ubuntu-22.04-R4.5-libc++	Tests of memory access errors using AddressSanitizer
clang-asan	clang-UBSAN	✓	ubuntu-22.04-R4.5-libc++	Tests of memory access errors using Undefined Behavior Sanitizer
clang16	clang16	✓	ubuntu-22.04-R4.5-libc++	Checks with Clang 16.0.0
clang17	clang17	✓	ubuntu-22.04-R4.5-libc++	Checks with LLVM pre-17.0.0
clang18	clang18		ubuntu-22.04-R4.5-libc++	Checks with LLVM pre-18.0.0
donttest	donttest	✓	ubuntu-22.04-R4.5	Tests including \donttest examples
gcc-asan	gcc-ASAN		ubuntu-22.04-R4.5	Tests of memory access errors using AddressSanitizer
gcc-asan	gcc-UBSAN		ubuntu-22.04-R4.5	Tests of memory access errors using Undefined Behavior Sanitizer
gcc11	gcc11			Checks with GCC trunk aka 11.0
gcc12	gcc12			Installation issues with fedora-gcc but not fedora-clang
gcc13	gcc13	✓	fedora-38-R4.5	Checks with GCC trunk aka 13.0
nold	noLD`	✓	ubuntu-22.04-R4.5	Tests without long double
noomp	noOMP		ubuntu-22.04-R4.5	Tests without OpenMP support
nosuggests	noSuggests	✓	fedora-38-R4.5	Tests without suggested packages
valgrind	valgrind	✓	fedora-38-R4.5	Tests of memory access errors using valgrind
rchk	rchk		ubuntu-22.04-R4.5-noshlib	Checks of native code (C/C++) based on static code analysis
rcnst	rcnst		ubuntu-22.04-R4.5	Checks of corruption of constants
rlibro	rlibro		ubuntu-22.04-R4.5	Checks with read-only user library

License

MIT @ The R Consortium, Posit PBC