Merge pull request #540 from jGaboardi/libpysal_req

Libpysal req
pysal · Oct 25, 2020 · 1add1ee · 1add1ee
2 parents 0cc13b8 + 9fa984f
commit 1add1ee
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diff --git a/README.md b/README.md
@@ -42,7 +42,7 @@ Using `conda`, `spaghetti` can be installed as follows:
 $ conda config --set channel_priority strict
 $ conda install --channel conda-forge spaghetti
 ```
-Also, `geopandas` provides [a nice example](https://geopandas.org/install.html#creating-a-new-environment) to create a fresh environment for working with spatial data.
+Also, `geopandas` provides [a nice example](https://geopandas.readthedocs.io/en/latest/getting_started/install.html#creating-a-new-environment) to create a fresh environment for working with spatial data.
 
 **Installing with [`PyPI`](https://pypi.org/project/spaghetti/)**
 ```
@@ -66,15 +66,16 @@ $ pip install git+https://github.com/pysal/spaghetti
 
 ## Requirements
 
-- [`esda`](https://esda.readthedocs.io/en/latest/)
-- [`libspatialindex`](https://libspatialindex.org/index.html)
+- [`esda`](https://pysal.org/esda/)
+- [`libpysal`](https://pysal.org/libpysal/)
+- [`libspatialindex`](https://libspatialindex.org/en/latest/)
 - [`numpy`](https://numpy.org/devdocs/)
-- [`rtree`](http://toblerity.org/rtree/install.html)
+- [`rtree`](https://rtree.readthedocs.io/en/latest/)
 - [`scipy`](http://scipy.github.io/devdocs/)
 
 ## Soft Dependencies
 
-- [`geopandas`](http://geopandas.org/install.html)
+- [`geopandas`](https://geopandas.readthedocs.io/en/latest/index.html)
 - [`shapely`](https://shapely.readthedocs.io/en/latest/)
 
 ##  Contribute
@@ -122,4 +123,3 @@ This project is/was partially funded through:
 [<img align="middle" src="docs/_static/images/ardc_logo.png" width="150">](https://atlantardc.wordpress.com) Atlanta Research Data Center: [A Polygon-Based Approach to Spatial Network Allocation](https://atlantardc.files.wordpress.com/2018/05/ardc-newsletter_2018_2.pdf)
 
 [<img align="middle" src="docs/_static/images/nsf_logo.png" width="100">](https://www.nsf.gov/index.jsp) National Science Foundation Award #1825768: [National Historical Geographic Information System](https://www.nsf.gov/awardsearch/showAward?AWD_ID=1825768&HistoricalAwards=false)
-
diff --git a/docs/.buildinfo b/docs/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 58d840357c14ebc84c3c7a5c3328e0c4
+config: 56a8d604ecfb6bc5ded6444e7c6f8973
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/_modules/index.html b/docs/_modules/index.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Overview: module code &#8212; spaghetti v1.5.2 Manual</title>
+    <title>Overview: module code &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="../_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/pysal-styles.css" />
@@ -41,7 +41,7 @@
         </button>
         <a class="navbar-brand" href="../index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/_modules/spaghetti/network.html b/docs/_modules/spaghetti/network.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spaghetti.network &#8212; spaghetti v1.5.2 Manual</title>
+    <title>spaghetti.network &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="../../_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../../_static/pysal-styles.css" />
@@ -41,7 +41,7 @@
         </button>
         <a class="navbar-brand" href="../../index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">
@@ -1010,8 +1010,7 @@ <h1>Source code for spaghetti.network</h1><div class="highlight"><pre>
 
 <span class="sd">        &gt;&gt;&gt; w = ntw.contiguityweights(graph=False)</span>
 
-<span class="sd">        Using the ``W`` object, access to</span>
-<span class="sd">        `esda &lt;https://esda.readthedocs.io/en/latest/index.html&gt;`_</span>
+<span class="sd">        Using the ``W`` object, access to `esda &lt;https://pysal.org/esda/&gt;`_</span>
 <span class="sd">        functionality is provided. First, a vector of attributes is</span>
 <span class="sd">        created for all edges with observations.</span>
 
@@ -1030,7 +1029,7 @@ <h1>Source code for spaghetti.network</h1><div class="highlight"><pre>
 <span class="sd">        3.0</span>
 
 <span class="sd">        Next, a standard call to</span>
-<span class="sd">        `esda.Moran &lt;https://esda.readthedocs.io/en/latest/generated/esda.Moran.html#esda.Moran&gt;`_</span>
+<span class="sd">        `esda.Moran &lt;https://pysal.org/esda/generated/esda.Moran.html#esda.Moran&gt;`_</span>
 <span class="sd">        is made and the result placed into ``res``.</span>
 
 <span class="sd">        &gt;&gt;&gt; res = esda.moran.Moran(y, w, permutations=99)</span>

diff --git a/docs/_sources/installation.rst.txt b/docs/_sources/installation.rst.txt
@@ -51,7 +51,7 @@ You can  also fork_ the `pysal/spaghetti`_ repo and create a local clone of your
 .. _3.7: https://docs.python.org/3.7/
 .. _3.8: https://docs.python.org/3.8/
 .. _spaghetti-feedstock: https://github.com/conda-forge/spaghetti-feedstock
-.. _a nice example: https://geopandas.org/install.html#creating-a-new-environment
+.. _a nice example: https://geopandas.readthedocs.io/en/latest/getting_started/install.html#creating-a-new-environment
 .. _conda: https://docs.conda.io/en/latest/
 .. _conda-forge: https://conda-forge.org
 .. _Anaconda Distribution: https://docs.continuum.io/anaconda/

diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '1.5.2',
+    VERSION: '1.5.3',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/api.html b/docs/api.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>API reference &#8212; spaghetti v1.5.2 Manual</title>
+    <title>API reference &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="_static/pysal-styles.css" />
@@ -43,7 +43,7 @@
         </button>
         <a class="navbar-brand" href="index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/generated/spaghetti.Network.html b/docs/generated/spaghetti.Network.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spaghetti.Network &#8212; spaghetti v1.5.2 Manual</title>
+    <title>spaghetti.Network &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="../_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/pysal-styles.css" />
@@ -43,7 +43,7 @@
         </button>
         <a class="navbar-brand" href="../index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">
@@ -746,8 +746,7 @@ <h1>spaghetti.Network<a class="headerlink" href="#spaghetti-network" title="Perm
 <div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">w</span> <span class="o">=</span> <span class="n">ntw</span><span class="o">.</span><span class="n">contiguityweights</span><span class="p">(</span><span class="n">graph</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
 </pre></div>
 </div>
-<p>Using the <code class="docutils literal notranslate"><span class="pre">W</span></code> object, access to
-<a class="reference external" href="https://esda.readthedocs.io/en/latest/index.html">esda</a>
+<p>Using the <code class="docutils literal notranslate"><span class="pre">W</span></code> object, access to <a class="reference external" href="https://pysal.org/esda/">esda</a>
 functionality is provided. First, a vector of attributes is
 created for all edges with observations.</p>
 <div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">w</span> <span class="o">=</span> <span class="n">ntw</span><span class="o">.</span><span class="n">contiguityweights</span><span class="p">(</span><span class="n">graph</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
@@ -766,7 +765,7 @@ <h1>spaghetti.Network<a class="headerlink" href="#spaghetti-network" title="Perm
 </pre></div>
 </div>
 <p>Next, a standard call to
-<a class="reference external" href="https://esda.readthedocs.io/en/latest/generated/esda.Moran.html#esda.Moran">esda.Moran</a>
+<a class="reference external" href="https://pysal.org/esda/generated/esda.Moran.html#esda.Moran">esda.Moran</a>
 is made and the result placed into <code class="docutils literal notranslate"><span class="pre">res</span></code>.</p>
 <div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">&gt;&gt;&gt; </span><span class="n">res</span> <span class="o">=</span> <span class="n">esda</span><span class="o">.</span><span class="n">moran</span><span class="o">.</span><span class="n">Moran</span><span class="p">(</span><span class="n">y</span><span class="p">,</span> <span class="n">w</span><span class="p">,</span> <span class="n">permutations</span><span class="o">=</span><span class="mi">99</span><span class="p">)</span>
 <span class="gp">&gt;&gt;&gt; </span><span class="nb">type</span><span class="p">(</span><span class="n">res</span><span class="p">)</span>

diff --git a/docs/generated/spaghetti.Network.loadnetwork.html b/docs/generated/spaghetti.Network.loadnetwork.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spaghetti.Network.loadnetwork &#8212; spaghetti v1.5.2 Manual</title>
+    <title>spaghetti.Network.loadnetwork &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="../_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/pysal-styles.css" />
@@ -43,7 +43,7 @@
         </button>
         <a class="navbar-brand" href="../index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/generated/spaghetti.Network.savenetwork.html b/docs/generated/spaghetti.Network.savenetwork.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spaghetti.Network.savenetwork &#8212; spaghetti v1.5.2 Manual</title>
+    <title>spaghetti.Network.savenetwork &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="../_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/pysal-styles.css" />
@@ -43,7 +43,7 @@
         </button>
         <a class="navbar-brand" href="../index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/generated/spaghetti.PointPattern.html b/docs/generated/spaghetti.PointPattern.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spaghetti.PointPattern &#8212; spaghetti v1.5.2 Manual</title>
+    <title>spaghetti.PointPattern &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="../_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/pysal-styles.css" />
@@ -43,7 +43,7 @@
         </button>
         <a class="navbar-brand" href="../index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/generated/spaghetti.element_as_gdf.html b/docs/generated/spaghetti.element_as_gdf.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spaghetti.element_as_gdf &#8212; spaghetti v1.5.2 Manual</title>
+    <title>spaghetti.element_as_gdf &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="../_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/pysal-styles.css" />
@@ -43,7 +43,7 @@
         </button>
         <a class="navbar-brand" href="../index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/generated/spaghetti.extract_component.html b/docs/generated/spaghetti.extract_component.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spaghetti.extract_component &#8212; spaghetti v1.5.2 Manual</title>
+    <title>spaghetti.extract_component &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="../_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/pysal-styles.css" />
@@ -43,7 +43,7 @@
         </button>
         <a class="navbar-brand" href="../index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/generated/spaghetti.regular_lattice.html b/docs/generated/spaghetti.regular_lattice.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spaghetti.regular_lattice &#8212; spaghetti v1.5.2 Manual</title>
+    <title>spaghetti.regular_lattice &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="../_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/pysal-styles.css" />
@@ -43,7 +43,7 @@
         </button>
         <a class="navbar-brand" href="../index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/generated/spaghetti.spanning_tree.html b/docs/generated/spaghetti.spanning_tree.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spaghetti.spanning_tree &#8212; spaghetti v1.5.2 Manual</title>
+    <title>spaghetti.spanning_tree &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="../_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="../_static/pysal-styles.css" />
@@ -43,7 +43,7 @@
         </button>
         <a class="navbar-brand" href="../index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/genindex.html b/docs/genindex.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Index &#8212; spaghetti v1.5.2 Manual</title>
+    <title>Index &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="_static/pysal-styles.css" />
@@ -41,7 +41,7 @@
         </button>
         <a class="navbar-brand" href="index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/index.html b/docs/index.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>spaghetti &#8212; spaghetti v1.5.2 Manual</title>
+    <title>spaghetti &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="_static/pysal-styles.css" />
@@ -42,7 +42,7 @@
         </button>
         <a class="navbar-brand" href="#">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">

diff --git a/docs/installation.html b/docs/installation.html
@@ -4,7 +4,7 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>Installation &#8212; spaghetti v1.5.2 Manual</title>
+    <title>Installation &#8212; spaghetti v1.5.3 Manual</title>
     <link rel="stylesheet" href="_static/bootstrap-sphinx.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <link rel="stylesheet" type="text/css" href="_static/pysal-styles.css" />
@@ -43,7 +43,7 @@
         </button>
         <a class="navbar-brand" href="index.html">
           spaghetti</a>
-        <span class="navbar-text navbar-version pull-left"><b>1.5.2</b></span>
+        <span class="navbar-text navbar-version pull-left"><b>1.5.3</b></span>
       </div>
 
         <div class="collapse navbar-collapse nav-collapse">
@@ -153,7 +153,7 @@ <h2>Installing with <code class="docutils literal notranslate"><span class="pre"
 $ conda install --channel conda-forge spaghetti
 </pre></div>
 </div>
-<p>Also, <code class="docutils literal notranslate"><span class="pre">geopandas</span></code> provides <a class="reference external" href="https://geopandas.org/install.html#creating-a-new-environment">a nice example</a> to create a fresh environment for working with spatial data.</p>
+<p>Also, <code class="docutils literal notranslate"><span class="pre">geopandas</span></code> provides <a class="reference external" href="https://geopandas.readthedocs.io/en/latest/getting_started/install.html#creating-a-new-environment">a nice example</a> to create a fresh environment for working with spatial data.</p>
 </div>
 <div class="section" id="installing-with-python-package-index">
 <h2>Installing with <a class="reference external" href="https://pypi.org/project/spaghetti/">Python Package Index</a><a class="headerlink" href="#installing-with-python-package-index" title="Permalink to this headline">¶</a></h2>