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Package OpenBLAS and use OpenBLAS in scipy #3331

Merged
merged 113 commits into from Apr 12, 2023
Merged

Package OpenBLAS and use OpenBLAS in scipy #3331

merged 113 commits into from Apr 12, 2023

Commits on Dec 9, 2022

  1. Add OpenBLAS package

    @lesteve
    lesteve committed Dec 9, 2022
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  2. Remove some stuff

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  3. Switch to OpenBLAS develop branch

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  4. Build openblas in core build

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Commits on Dec 10, 2022

  1. iter

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  2. iter

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  3. Add build for openblas only to quick fail

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  4. Copy all .h from openblas in package/.libs/include

    @lesteve
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  5. Attempt at using openblas in scipy

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  6. May actually need this

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  7. Revert "Add build for openblas only to quick fail" 

    This reverts commit c7dce40.
    @lesteve
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  8. iter

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  9. Build scipy too in core + numpy build

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  10. iter

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  11. iter

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Commits on Dec 12, 2022

  1. Attempt to replace void by int returns

    @lesteve
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  2. Use LDFLAGS

    @lesteve
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Commits on Dec 13, 2022

  1. Remove -std=c++14 flag

    @lesteve
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  2. trigger CI

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Commits on Jan 2, 2023

  1. wip

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Commits on Jan 23, 2023

  1. Trigger CI

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  2. Merge branch 'main' of https://github.com/pyodide/pyodide into use-op… 

    …enblas
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  3. Trigger CI

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  4. Revert unwanted change?

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Commits on Jan 31, 2023

  1. wip

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  2. Merge branch 'main' of https://github.com/pyodide/pyodide into use-op… 

    …enblas
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  3. Trigger CI

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Commits on Feb 6, 2023

  1. wip

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  2. fix

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Commits on Mar 10, 2023

  1. Merge remote-tracking branch 'upstream/main' into use-openblas

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  2. wip

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  3. Remove scipy_slu_config.h patch

    @hoodmane
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  4. Try again with scipy_slu_config.h patch

    @hoodmane
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  5. Rediff make-int-returns patch

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  6. Fix patch again...

    @hoodmane
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  7. Remove patch that removes zcopy decl

    @hoodmane
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  8. Remove some more header removal parts from the patch

    @hoodmane
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  9. Fix scipy patch again

    @hoodmane
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  10. Update ilu_cdrop_row void to int patch

    @hoodmane
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  11. Use sed to replace some more void return values with ints

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  12. Apply replacement to both .c and .h files

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  13. More sed for void to int

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  14. Add patch for scipy/scipy#18124

    @hoodmane
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  15. Add -Wno-parentheses to cflags

    @hoodmane
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  16. Add another sed

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  17. More sed

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  18. More sed

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  19. MORE INT!

    @hoodmane
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  20. Fix typo

    @hoodmane
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  21. Fix declaration of sasum in blas_subroutine wrappers.c

    @hoodmane
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  22. Patch more bad return types in blas_subroutine_wrappers.c

    @hoodmane
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  23. Apply doublereal ==> float replacement on all f2c output

    @hoodmane
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  24. Don't apply transform to GMRESREVCOM

    @hoodmane
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  25. More fixes

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  26. Add comment

    @hoodmane
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  27. Fix return type of clanhs too screw you f2c

    @hoodmane
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Commits on Mar 31, 2023

  1. Merge branch 'main' of https://github.com/pyodide/pyodide into use-op… 

    …enblas
    @lesteve
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  2. Use f2c -R to avoid generating doublereal return types instead of float

    @lesteve
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  3. Avoid c_abs symbol conflict

    @lesteve
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  4. Update OpenBLAS to 0.3.22 release

    @lesteve
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  5. LAPACKE not needed

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Commits on Apr 1, 2023

  1. scipy compiles

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  2. scipy loads in browser

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Commits on Apr 2, 2023

  1. Hacky reuse of CLAPACK to include f2c symbols into libopenblas.so 

    This is needed for scipy. Also some attempt at reusing f2clapack.sh to be
closer to OpenBLAS but not working
    @lesteve
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  2. Remove RIMME f2clapack.sh attempt

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  3. Use openblas in suitesparse

    @lesteve
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  4. Build full scipy

    @lesteve
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  5. Fix signature mismatch in scipy.stats

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  6. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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  7. Remove some unwanted real -> double changes

    @lesteve
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Commits on Apr 3, 2023

  1. Fix issue in arpack (but complext tests fail)

    @lesteve
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  2. gensim work-around

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  3. Remove some stuff from scipy patch without being 100% sure ...

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Commits on Apr 5, 2023

  1. Debug zgetrf issue through Cython scipy linalg bindings

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  2. Revert "Debug zgetrf issue through Cython scipy linalg bindings" 

    This reverts commit 543eee24508da8362be010f647275cd5fc6b6158.
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  3. Update OpenBLAS to 0.3.23 which fixes 0 determinant for complex matrices

    @lesteve
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Commits on Apr 6, 2023

  1. Update pyodide-build/pyodide_build/_f2c_fixes.py 

    Co-authored-by: Hood Chatham <roberthoodchatham@gmail.com>
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  2. Update packages/CLAPACK/meta.yaml 

    Co-authored-by: Hood Chatham <roberthoodchatham@gmail.com>
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  3. Add comment about f2c -R

    @lesteve
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  4. Remove unneeded patches

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  5. Removed commented out code

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  6. Remove ilaenv and xerbla f2py wrapper

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  7. Rename CLAPACk -> libf2c and remove mentions of CLAPACK where appropr… 

    …iate
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  8. Reduce scipy subpackages by perl replacement

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  9. Add tip to build less scipy sub-packages and reduce iteration time

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  10. Update libf2c patches

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  11. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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  12. [ci skip] Revert "[pre-commit.ci] auto fixes from pre-commit.com hooks" 

    This reverts commit 5d88956.
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  13. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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  14. Reinstate prettierignore + tweaks

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  15. Fix libf2c meta.yaml

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  16. Revert unwanted change to make.inc

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  17. Change version name ...

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  18. Update scipy patches

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  19. Add scipy Boost patch

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  20. Remove sed replacement since it is done in a patch

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  21. Use gensim patch rather than cryptic sed replacement

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  22. Remove unneeded flag for OpenBLAS

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  23. Minor tweak to scipy tip

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  24. OpenBLAS headers not needed for scipy compilation

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Commits on Apr 7, 2023

  1. Add comment about patch included upstream

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  2. Add comment about OpenBLAS flag

    @lesteve
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  3. Add comment about libf2c

    @lesteve
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  4. Remove unneeded flag

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  5. Path xerbla_array rather than regex replacement

    @lesteve
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  6. Keep c_abs and z_abs in OpenBLAS

    @lesteve
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  7. Fix c_abs signature

    @lesteve
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  8. Revert unwanted change

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Commits on Apr 8, 2023

  1. Add missing file

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Commits on Apr 11, 2023

  1. Trigger CI

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  2. libf2c is a static library now

    @lesteve
    lesteve committed Apr 11, 2023
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  3. Merge branch 'main' of https://github.com/pyodide/pyodide into use-op… 

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    @lesteve
    lesteve committed Apr 11, 2023
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  4. Add changelog entry

    @lesteve
    lesteve committed Apr 11, 2023
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