Claude Mosaiq demo #2114
Workflow file for this run
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| name: MosaiqDbTests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| jobs: | |
| # ============================================================================= | |
| TestMosaiqDb: | |
| # if: false | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 60 | |
| services: | |
| SQLServer: | |
| image: mcr.microsoft.com/mssql/server:2017-latest | |
| env: | |
| ACCEPT_EULA: Y | |
| SA_PASSWORD: sqlServerPassw0rd | |
| ports: | |
| - 1433:1433 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Get full Python version | |
| id: full-python-version | |
| shell: bash | |
| run: | | |
| echo ::set-output name=version::$(python -c "import sys; print('-'.join(str(v) for v in sys.version_info))") | |
| # ----------------------------------------------------------------------------- | |
| # Set up pip | |
| - name: Get pip cache dir | |
| id: pip-cache | |
| run: | | |
| python -m pip install -U pip # to ensure version > 20 to have cache dir | |
| echo "::set-output name=dir::$(pip cache dir)" | |
| - name: Pip Cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ steps.pip-cache.outputs.dir }} | |
| key: pip-tests-ubuntu-${{ steps.full-python-version.outputs.version }} | |
| # ----------------------------------------------------------------------------- | |
| # Upgrade pip and setuptools, and install poetry | |
| - name: Upgrade pip and setuptools | |
| run: | | |
| pip install --upgrade pip setuptools | |
| - name: Install Poetry | |
| uses: snok/install-poetry@v1.3.4 | |
| with: | |
| version: 1.7.1 | |
| virtualenvs-create: true | |
| # ----------------------------------------------------------------------------- | |
| # Set up Poetry | |
| - name: Configure poetry | |
| run: | | |
| poetry config virtualenvs.in-project true | |
| - name: Poetry Cache | |
| uses: actions/cache@v2 | |
| id: poetry-cache | |
| with: | |
| path: .venv | |
| key: venv-tests-ubuntu-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('**/poetry.lock') }} | |
| # This is from <https://github.com/python-poetry/poetry/blob/639d5e057/.github/workflows/main.yml#L57-L60> | |
| - name: Ensure cache is healthy | |
| if: steps.poetry-cache.outputs.cache-hit == 'true' | |
| shell: bash | |
| run: | | |
| timeout 10s poetry run pip --version || rm -rf .venv | |
| # ----------------------------------------------------------------------------- | |
| ## Install with Tests Environment | |
| - name: Install a tests environment | |
| run: | | |
| poetry install -E mosaiq -E tests -E dicom | |
| # ----------------------------------------------------------------------------- | |
| # PyMedPhys Data Cache | |
| - name: Get PyMedPhys cache directory | |
| id: pymedphys-cache-location | |
| run: | | |
| echo "::set-output name=dir::$(poetry run python -c 'import pymedphys._config as cf; print(str(cf.get_config_dir()))')" | |
| - name: PyMedPhys Cache | |
| id: pymedphys-cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ steps.pymedphys-cache-location.outputs.dir }} | |
| key: pymedphys-tests-ubuntu-${{ hashFiles('**/hashes.json') }} | |
| # ----------------------------------------------------------------------------- | |
| # TESTS | |
| ## Mosaiq_db tests -- only run on Ubuntu because needs container | |
| - name: Run MSQ database tests | |
| run: | | |
| poetry run pymedphys dev tests -v --mosaiqdb |