Updating the docs in dev/ for branch: main, commit 8ce62fd [skip ci]

pydicom · Apr 1, 2024 · 1286ee1 · 1286ee1
1 parent e66e735
commit 1286ee1
Show file tree

Hide file tree

Showing 449 changed files with 785 additions and 785 deletions.
diff --git a/dev/.buildinfo b/dev/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 37014eed0fe74405ac9d7b7ec202832b
+config: a4e5cd87108263c09cdc317fafb8b4d4
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
diff --git a/dev/_sources/auto_examples/image_processing/plot_waveforms.rst.txt b/dev/_sources/auto_examples/image_processing/plot_waveforms.rst.txt
@@ -85,7 +85,7 @@ matplotlib.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.266 seconds)
+   **Total running time of the script:** (0 minutes 0.216 seconds)
 
 
 .. _sphx_glr_download_auto_examples_image_processing_plot_waveforms.py:

diff --git a/dev/_sources/auto_examples/image_processing/sg_execution_times.rst.txt b/dev/_sources/auto_examples/image_processing/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:00.271** total execution time for 3 files **from auto_examples/image_processing**:
+**00:00.221** total execution time for 3 files **from auto_examples/image_processing**:
 
 .. container::
 
@@ -33,7 +33,7 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_image_processing_plot_waveforms.py` (``plot_waveforms.py``)
-     - 00:00.266
+     - 00:00.216
      - 0.0
    * - :ref:`sphx_glr_auto_examples_image_processing_plot_downsize_image.py` (``plot_downsize_image.py``)
      - 00:00.005

diff --git a/dev/_sources/auto_examples/input_output/plot_read_dicom.rst.txt b/dev/_sources/auto_examples/input_output/plot_read_dicom.rst.txt
@@ -95,7 +95,7 @@ information, and show it using matplotlib.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.104 seconds)
+   **Total running time of the script:** (0 minutes 0.088 seconds)
 
 
 .. _sphx_glr_download_auto_examples_input_output_plot_read_dicom.py:

diff --git a/dev/_sources/auto_examples/input_output/plot_read_fileset.rst.txt b/dev/_sources/auto_examples/input_output/plot_read_fileset.rst.txt
@@ -105,7 +105,7 @@ This example shows how to read and interact with a DICOM File-set.
     Found 0 instances with PhotometricInterpretation='MONOCHROME1' without loading the stored instances and 3 instances with loading
 
     Original File-set still at /root/project/src/pydicom/data/test_files/dicomdirtests
-    File-set copied to /tmp/tmpixja5_xq and contains the following files:
+    File-set copied to /tmp/tmpb5l5qtrh and contains the following files:
       DICOMDIR
       PT000000/ST000000/SE000000/IM000000
       PT000000/ST000000/SE000001/IM000000
@@ -264,7 +264,7 @@ This example shows how to read and interact with a DICOM File-set.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.226 seconds)
+   **Total running time of the script:** (0 minutes 0.199 seconds)
 
 
 .. _sphx_glr_download_auto_examples_input_output_plot_read_fileset.py:

diff --git a/dev/_sources/auto_examples/input_output/plot_write_dicom.rst.txt b/dev/_sources/auto_examples/input_output/plot_write_dicom.rst.txt
@@ -37,8 +37,8 @@ have to change UIDs to valid values and add all required DICOM data elements.
 
     Setting dataset values...
     Setting file meta information...
-    Writing dataset to: /tmp/tmpmkhheoiq.dcm
-    Load dataset from: /tmp/tmpmkhheoiq.dcm ...
+    Writing dataset to: /tmp/tmpzdva2rd1.dcm
+    Load dataset from: /tmp/tmpzdva2rd1.dcm ...
     Dataset.file_meta -------------------------------
     (0002,0000) File Meta Information Group Length  UL: 128
     (0002,0001) File Meta Information Version       OB: b'\x00\x01'
@@ -48,11 +48,11 @@ have to change UIDs to valid values and add all required DICOM data elements.
     (0002,0012) Implementation Class UID            UI: 1.2.3.4
     (0002,0013) Implementation Version Name         SH: 'PYDICOM 3.0.0'
     -------------------------------------------------
-    (0008,0023) Content Date                        DA: '20240331'
-    (0008,0033) Content Time                        TM: '231835.526343'
+    (0008,0023) Content Date                        DA: '20240401'
+    (0008,0033) Content Time                        TM: '165049.213282'
     (0010,0010) Patient's Name                      PN: 'Test^Firstname'
     (0010,0020) Patient ID                          LO: '123456'
-    Deleting file: /tmp/tmpmkhheoiq.dcm ...
+    Deleting file: /tmp/tmpzdva2rd1.dcm ...
 
 
 

diff --git a/dev/_sources/auto_examples/input_output/sg_execution_times.rst.txt b/dev/_sources/auto_examples/input_output/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:00.342** total execution time for 5 files **from auto_examples/input_output**:
+**00:00.299** total execution time for 5 files **from auto_examples/input_output**:
 
 .. container::
 
@@ -33,10 +33,10 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_input_output_plot_read_fileset.py` (``plot_read_fileset.py``)
-     - 00:00.226
+     - 00:00.199
      - 0.0
    * - :ref:`sphx_glr_auto_examples_input_output_plot_read_dicom.py` (``plot_read_dicom.py``)
-     - 00:00.104
+     - 00:00.088
      - 0.0
    * - :ref:`sphx_glr_auto_examples_input_output_plot_printing_dataset.py` (``plot_printing_dataset.py``)
      - 00:00.005

diff --git a/dev/_sources/auto_examples/metadata_processing/sg_execution_times.rst.txt b/dev/_sources/auto_examples/metadata_processing/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:00.012** total execution time for 3 files **from auto_examples/metadata_processing**:
+**00:00.011** total execution time for 3 files **from auto_examples/metadata_processing**:
 
 .. container::
 

diff --git a/dev/_sources/auto_examples/plot_dicom_difference.rst.txt b/dev/_sources/auto_examples/plot_dicom_difference.rst.txt
@@ -742,7 +742,7 @@ This examples illustrates how to find the differences between two DICOM files.
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** (0 minutes 0.100 seconds)
+   **Total running time of the script:** (0 minutes 0.098 seconds)
 
 
 .. _sphx_glr_download_auto_examples_plot_dicom_difference.py:

diff --git a/dev/_sources/auto_examples/sg_execution_times.rst.txt b/dev/_sources/auto_examples/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:00.100** total execution time for 4 files **from auto_examples**:
+**00:00.098** total execution time for 4 files **from auto_examples**:
 
 .. container::
 
@@ -33,7 +33,7 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_plot_dicom_difference.py` (``plot_dicom_difference.py``)
-     - 00:00.100
+     - 00:00.098
      - 0.0
    * - :ref:`sphx_glr_auto_examples_dicomtree.py` (``dicomtree.py``)
      - 00:00.000

diff --git a/dev/_sources/sg_execution_times.rst.txt b/dev/_sources/sg_execution_times.rst.txt
@@ -6,7 +6,7 @@
 
 Computation times
 =================
-**00:00.724** total execution time for 15 files **from all galleries**:
+**00:00.630** total execution time for 15 files **from all galleries**:
 
 .. container::
 
@@ -33,16 +33,16 @@ Computation times
      - Time
      - Mem (MB)
    * - :ref:`sphx_glr_auto_examples_image_processing_plot_waveforms.py` (``../examples/image_processing/plot_waveforms.py``)
-     - 00:00.266
+     - 00:00.216
      - 0.0
    * - :ref:`sphx_glr_auto_examples_input_output_plot_read_fileset.py` (``../examples/input_output/plot_read_fileset.py``)
-     - 00:00.226
-     - 0.0
-   * - :ref:`sphx_glr_auto_examples_input_output_plot_read_dicom.py` (``../examples/input_output/plot_read_dicom.py``)
-     - 00:00.104
+     - 00:00.199
      - 0.0
    * - :ref:`sphx_glr_auto_examples_plot_dicom_difference.py` (``../examples/plot_dicom_difference.py``)
-     - 00:00.100
+     - 00:00.098
+     - 0.0
+   * - :ref:`sphx_glr_auto_examples_input_output_plot_read_dicom.py` (``../examples/input_output/plot_read_dicom.py``)
+     - 00:00.088
      - 0.0
    * - :ref:`sphx_glr_auto_examples_metadata_processing_plot_anonymize.py` (``../examples/metadata_processing/plot_anonymize.py``)
      - 00:00.007

diff --git a/dev/auto_examples/image_processing/plot_waveforms.html b/dev/auto_examples/image_processing/plot_waveforms.html
@@ -168,7 +168,7 @@
 <a href="https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.show.html#matplotlib.pyplot.show" title="matplotlib.pyplot.show" class="sphx-glr-backref-module-matplotlib-pyplot sphx-glr-backref-type-py-function"><span class="n">plt</span><span class="o">.</span><span class="n">show</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.266 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.216 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-image-processing-plot-waveforms-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/e5a4893fc2534cd7549d6717555a1054/plot_waveforms.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_waveforms.ipynb</span></code></a></p>

diff --git a/dev/auto_examples/image_processing/sg_execution_times.html b/dev/auto_examples/image_processing/sg_execution_times.html
@@ -105,7 +105,7 @@
 
   <section id="computation-times">
 <span id="sphx-glr-auto-examples-image-processing-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
-<p><strong>00:00.271</strong> total execution time for 3 files <strong>from auto_examples/image_processing</strong>:</p>
+<p><strong>00:00.221</strong> total execution time for 3 files <strong>from auto_examples/image_processing</strong>:</p>
 <div class="docutils container">
 <style scoped>
 <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
@@ -127,7 +127,7 @@
 </thead>
 <tbody>
 <tr class="row-even"><td><p><a class="reference internal" href="plot_waveforms.html#sphx-glr-auto-examples-image-processing-plot-waveforms-py"><span class="std std-ref">Decode and plot Waveform Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_waveforms.py</span></code>)</p></td>
-<td><p>00:00.266</p></td>
+<td><p>00:00.216</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="plot_downsize_image.html#sphx-glr-auto-examples-image-processing-plot-downsize-image-py"><span class="std std-ref">Downsize MRI image using pydicom</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_downsize_image.py</span></code>)</p></td>

diff --git a/dev/auto_examples/input_output/plot_read_dicom.html b/dev/auto_examples/input_output/plot_read_dicom.html
@@ -175,7 +175,7 @@
 <a href="https://matplotlib.org/stable/api/_as_gen/matplotlib.pyplot.show.html#matplotlib.pyplot.show" title="matplotlib.pyplot.show" class="sphx-glr-backref-module-matplotlib-pyplot sphx-glr-backref-type-py-function"><span class="n">plt</span><span class="o">.</span><span class="n">show</span></a><span class="p">()</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.104 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.088 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-input-output-plot-read-dicom-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/596a13aa12214abf0489d3740bbada1f/plot_read_dicom.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_read_dicom.ipynb</span></code></a></p>

diff --git a/dev/auto_examples/input_output/plot_read_fileset.html b/dev/auto_examples/input_output/plot_read_fileset.html
@@ -199,7 +199,7 @@
 Found 0 instances with PhotometricInterpretation=&#39;MONOCHROME1&#39; without loading the stored instances and 3 instances with loading
 
 Original File-set still at /root/project/src/pydicom/data/test_files/dicomdirtests
-File-set copied to /tmp/tmpixja5_xq and contains the following files:
+File-set copied to /tmp/tmpb5l5qtrh and contains the following files:
   DICOMDIR
   PT000000/ST000000/SE000000/IM000000
   PT000000/ST000000/SE000001/IM000000
@@ -350,7 +350,7 @@
         <span class="nb">print</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;  </span><span class="si">{</span><a href="https://docs.python.org/3/library/pathlib.html#pathlib.PurePath.relative_to" title="pathlib.PurePath.relative_to" class="sphx-glr-backref-module-pathlib sphx-glr-backref-type-py-method"><span class="n">p</span><span class="o">.</span><span class="n">relative_to</span></a><span class="p">(</span><a href="https://docs.python.org/3/library/pathlib.html#pathlib.PosixPath" title="pathlib.PosixPath" class="sphx-glr-backref-module-pathlib sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">root</span></a><span class="p">)</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.226 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.199 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-input-output-plot-read-fileset-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../../_downloads/047cd4e7536a54c1a4581d1eeeec2a85/plot_read_fileset.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_read_fileset.ipynb</span></code></a></p>

diff --git a/dev/auto_examples/input_output/plot_write_dicom.html b/dev/auto_examples/input_output/plot_write_dicom.html
@@ -131,8 +131,8 @@
 have to change UIDs to valid values and add all required DICOM data elements.</p>
 <div class="sphx-glr-script-out highlight-none notranslate"><div class="highlight"><pre><span></span>Setting dataset values...
 Setting file meta information...
-Writing dataset to: /tmp/tmpmkhheoiq.dcm
-Load dataset from: /tmp/tmpmkhheoiq.dcm ...
+Writing dataset to: /tmp/tmpzdva2rd1.dcm
+Load dataset from: /tmp/tmpzdva2rd1.dcm ...
 Dataset.file_meta -------------------------------
 (0002,0000) File Meta Information Group Length  UL: 128
 (0002,0001) File Meta Information Version       OB: b&#39;\x00\x01&#39;
@@ -142,11 +142,11 @@
 (0002,0012) Implementation Class UID            UI: 1.2.3.4
 (0002,0013) Implementation Version Name         SH: &#39;PYDICOM 3.0.0&#39;
 -------------------------------------------------
-(0008,0023) Content Date                        DA: &#39;20240331&#39;
-(0008,0033) Content Time                        TM: &#39;231835.526343&#39;
+(0008,0023) Content Date                        DA: &#39;20240401&#39;
+(0008,0033) Content Time                        TM: &#39;165049.213282&#39;
 (0010,0010) Patient&#39;s Name                      PN: &#39;Test^Firstname&#39;
 (0010,0020) Patient ID                          LO: &#39;123456&#39;
-Deleting file: /tmp/tmpmkhheoiq.dcm ...
+Deleting file: /tmp/tmpzdva2rd1.dcm ...
 </pre></div>
 </div>
 <div class="line-block">

diff --git a/dev/auto_examples/input_output/sg_execution_times.html b/dev/auto_examples/input_output/sg_execution_times.html
@@ -105,7 +105,7 @@
 
   <section id="computation-times">
 <span id="sphx-glr-auto-examples-input-output-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
-<p><strong>00:00.342</strong> total execution time for 5 files <strong>from auto_examples/input_output</strong>:</p>
+<p><strong>00:00.299</strong> total execution time for 5 files <strong>from auto_examples/input_output</strong>:</p>
 <div class="docutils container">
 <style scoped>
 <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
@@ -127,11 +127,11 @@
 </thead>
 <tbody>
 <tr class="row-even"><td><p><a class="reference internal" href="plot_read_fileset.html#sphx-glr-auto-examples-input-output-plot-read-fileset-py"><span class="std std-ref">Read a DICOM File-set</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_read_fileset.py</span></code>)</p></td>
-<td><p>00:00.226</p></td>
+<td><p>00:00.199</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="plot_read_dicom.html#sphx-glr-auto-examples-input-output-plot-read-dicom-py"><span class="std std-ref">Read a Dataset and plot Pixel Data</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_read_dicom.py</span></code>)</p></td>
-<td><p>00:00.104</p></td>
+<td><p>00:00.088</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-even"><td><p><a class="reference internal" href="plot_printing_dataset.html#sphx-glr-auto-examples-input-output-plot-printing-dataset-py"><span class="std std-ref">Format the output of the data set printing</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_printing_dataset.py</span></code>)</p></td>

diff --git a/dev/auto_examples/metadata_processing/sg_execution_times.html b/dev/auto_examples/metadata_processing/sg_execution_times.html
@@ -105,7 +105,7 @@
 
   <section id="computation-times">
 <span id="sphx-glr-auto-examples-metadata-processing-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
-<p><strong>00:00.012</strong> total execution time for 3 files <strong>from auto_examples/metadata_processing</strong>:</p>
+<p><strong>00:00.011</strong> total execution time for 3 files <strong>from auto_examples/metadata_processing</strong>:</p>
 <div class="docutils container">
 <style scoped>
 <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />

diff --git a/dev/auto_examples/plot_dicom_difference.html b/dev/auto_examples/plot_dicom_difference.html
@@ -819,7 +819,7 @@
         <span class="nb">print</span><span class="p">(</span><a href="https://docs.python.org/3/library/stdtypes.html#str" title="builtins.str" class="sphx-glr-backref-module-builtins sphx-glr-backref-type-py-class sphx-glr-backref-instance"><span class="n">line</span></a><span class="p">)</span>
 </pre></div>
 </div>
-<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.100 seconds)</p>
+<p class="sphx-glr-timing"><strong>Total running time of the script:</strong> (0 minutes 0.098 seconds)</p>
 <div class="sphx-glr-footer sphx-glr-footer-example docutils container" id="sphx-glr-download-auto-examples-plot-dicom-difference-py">
 <div class="sphx-glr-download sphx-glr-download-jupyter docutils container">
 <p><a class="reference download internal" download="" href="../_downloads/41ba38a2ae2d88170db68a78dcabe080/plot_dicom_difference.ipynb"><code class="xref download docutils literal notranslate"><span class="pre">Download</span> <span class="pre">Jupyter</span> <span class="pre">notebook:</span> <span class="pre">plot_dicom_difference.ipynb</span></code></a></p>

diff --git a/dev/auto_examples/sg_execution_times.html b/dev/auto_examples/sg_execution_times.html
@@ -105,7 +105,7 @@
 
   <section id="computation-times">
 <span id="sphx-glr-auto-examples-sg-execution-times"></span><h1>Computation times<a class="headerlink" href="#computation-times" title="Link to this heading">¶</a></h1>
-<p><strong>00:00.100</strong> total execution time for 4 files <strong>from auto_examples</strong>:</p>
+<p><strong>00:00.098</strong> total execution time for 4 files <strong>from auto_examples</strong>:</p>
 <div class="docutils container">
 <style scoped>
 <link href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/5.3.0/css/bootstrap.min.css" rel="stylesheet" />
@@ -127,7 +127,7 @@
 </thead>
 <tbody>
 <tr class="row-even"><td><p><a class="reference internal" href="plot_dicom_difference.html#sphx-glr-auto-examples-plot-dicom-difference-py"><span class="std std-ref">Analyse differences between DICOM files</span></a> (<code class="docutils literal notranslate"><span class="pre">plot_dicom_difference.py</span></code>)</p></td>
-<td><p>00:00.100</p></td>
+<td><p>00:00.098</p></td>
 <td><p>0.0</p></td>
 </tr>
 <tr class="row-odd"><td><p><a class="reference internal" href="dicomtree.html#sphx-glr-auto-examples-dicomtree-py"><span class="std std-ref">Show a dicom file using hierarchical tree</span></a> (<code class="docutils literal notranslate"><span class="pre">dicomtree.py</span></code>)</p></td>