tox.ini

# Tox (http://tox.testrun.org/) is a tool for running tests
# in multiple virtualenvs. This configuration file will run the
# test suite on all supported python versions. To use it, "pip install tox"
# and then run "tox" from this directory.

[tox]
isolated_build = true
envlist =
    # always keep coverage-clean first
    coverage-clean
    # code linters/stylers
    lint
    manifest
    pyroma
    flake8
    # documentation linters/checkers
    doc8
    readme
    docs
    # the actual tests
    py
    # always keep coverage-report last
    coverage-report

[testenv]
commands =
    {[testenv:doctests]commands}
    coverage run -p -m pytest --durations=20 {posargs:tests}
passenv = PYBEL_TEST_CONNECTOR PYBEL_TEST_CONNECTION HOME
deps =
    coverage
    pytest
    {env:PYBEL_TEST_CONNECTOR:}
extras =
    jupyter
    grounding
whitelist_externals =
    /bin/cat
    /bin/cp
    /bin/mkdir
    /usr/bin/git

[testenv:doctests]
commands =
    pytest --doctest-modules \
        src/pybel/struct/summary \
        src/pybel/struct/filters \
        src/pybel/struct/mutation \
        src/pybel/struct/graph.py
deps =
    pytest

[testenv:coverage-clean]
deps = coverage
skip_install = true
commands = coverage erase

[testenv:manifest]
deps = check-manifest
skip_install = true
commands = check-manifest

[testenv:lint]
deps =
    black
    isort
skip_install = true
commands =
    black src/ tests/
    isort src/ tests/
description = Run linters.

[testenv:flake8]
skip_install = true
deps =
    flake8
    flake8-bandit
    flake8-colors
    flake8-docstrings
    flake8-isort
    flake8-bugbear
    flake8-broken-line
    flake8-black
    pep8-naming
    pydocstyle
commands =
    flake8 src/pybel/ \
        tests/test_schema.py \
        tests/test_grounding.py
description = Run the flake8 tool with several plugins (bandit, docstrings, import order, pep8 naming).

[testenv:xenon]
deps = xenon
skip_install = true
commands = xenon --max-average A --max-modules A --max-absolute B .
description = Run the xenon tool to monitor code complexity.

[testenv:pyroma]
deps =
    pygments
    pyroma
skip_install = true
commands = pyroma --min=10 .
description = Run the pyroma tool to check the package friendliness of the project.

[testenv:mypy]
deps = mypy
skip_install = true
commands = mypy --ignore-missing-imports src/pybel/
description = Run the mypy tool to check static typing on the project.

[testenv:doc8]
skip_install = true
deps =
    sphinx
    doc8
commands =
    doc8 docs/source/ AUTHORS.rst CHANGELOG.rst README.rst
description = Run the doc8 tool to check the style of the RST files in the project docs.

[testenv:readme]
commands = rst-lint README.rst
skip_install = true
deps =
    restructuredtext_lint
    pygments
description = Run the rst-lint tool to check the style of the README.

[testenv:docs]
changedir = docs
extras =
    docs
    jupyter
    grounding
commands =
    mkdir -p {envtmpdir}
    cp -r source {envtmpdir}/source
    sphinx-build -W -b html -d {envtmpdir}/build/doctrees {envtmpdir}/source {envtmpdir}/build/html
    sphinx-build -W -b coverage -d {envtmpdir}/build/doctrees {envtmpdir}/source {envtmpdir}/build/coverage
    cat {envtmpdir}/build/coverage/c.txt
    cat {envtmpdir}/build/coverage/python.txt

[testenv:coverage-report]
deps = coverage
skip_install = true
commands =
    coverage combine
    coverage report

####################
# Deployment tools #
####################

[testenv:bumpversion]
commands = bumpversion {posargs}
skip_install = true
passenv = HOME
deps =
    bumpversion

[testenv:build]
skip_install = true
deps =
    wheel
    build
commands =
    python -m build --sdist --wheel --no-isolation

[testenv:release]
description = Release the code to PyPI so users can pip install it
skip_install = true
deps =
    {[testenv:build]deps}
    twine >= 1.5.0
commands =
    {[testenv:build]commands}
    twine upload --skip-existing dist/*

[testenv:release-test]
description = Release the code to the test PyPI site
skip_install = true
deps =
    {[testenv:build]deps}
    twine >= 1.5.0
commands =
    {[testenv:build]commands}
    twine upload --skip-existing --repository-url https://test.pypi.org/simple/ dist/*

[testenv:finish]
skip_install = true
passenv =
    HOME
    TWINE_USERNAME
    TWINE_PASSWORD
deps =
    {[testenv:release]deps}
    bump2version
commands =
    bump2version release --tag
    {[testenv:release]commands}
    git push --tags
    bump2version patch
    git push
whitelist_externals =
    /usr/bin/git