PMC Tables Pipeline

Note: The data processing pipeline notebooks have been moved to the main pmc-tables repo. The pmc-tables-pipeline repo has been archived.

Flowchart

graph TD;
  statistics.ipynb --> download.ipynb;
  to_download.ipynb --> download.ipynb;
  download.ipynb --> archive_to_hdf5.ipynb;
  archive_to_hdf5.ipynb --> query_mutation_tables.ipynb;
  presentation.ipynb;
  project_report.ipynb;

Description

This repository contains the pipeline for extracting and processing tables from PubMed Central and Europe PMC.