Skip to content
View philippbayer's full-sized avatar

Organizations

@AppliedBioinformatics @openSNP @pmlg
Block or Report

Block or report philippbayer

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
philippbayer/README.md

Hi there πŸ‘‹

I use computers to learn how genomes work.

  • πŸ”­ I’m currently working on interpretable ML around environmental DNA (eDNA) from Western Australia's oceans. Hopefully soon I will have models which tell me which WA ocean areas are healthy, which areas show more diversity than expected, and which ones need help!
  • πŸ‘― I'm always happy to chat anything interpretable ML, especially applied to sequencing data (genomes/reads)!
  • πŸ“« How to reach me: https://genomic.social/@philippbayer is probably fastest. if not, my Minderoo email is pbayerATminderooDOTorg
  • πŸ˜„ Pronouns: he/him
  • πŸ’¬ I regularly blog at https://philippbayer.github.io/blerg/
  • ⚑ Fun fact: most crops we rely on (bread wheat, canola, coffee, cotton, strawberry, etc.) are allopolyploids, that means that their cells contain a bunch of genomes from two or more ancestral species (canola: 2 genomes, bread wheat: 3 genomes). We humans have only one genome, boring.

Philipp's GitHub stats

Popular repositories

  1. Things-a-scientist-is-suppposed-to-know Things-a-scientist-is-suppposed-to-know Public

    A comprehensive and long list of things a modern scientist is supposed to know

    288 21

  2. submission_checklist submission_checklist Public

    A checklist to help you avoid all those minor errors when submitting a scientific manuscript

    83 12

  3. Goodreads_visualization Goodreads_visualization Public

    A Jupyter notebook where I play with my Goodreads data

    Makefile 53 8

  4. orthomclToVenn orthomclToVenn Public

    Creates Venn diagrams for OrthoMCL output

    Python 16 7

  5. CV CV Public

    My curriculum vitae.

    TeX 10 1

  6. Bioinformatics-tools Bioinformatics-tools Public

    Small repo with tiny scripts used in bioinformatics

    Python 4