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petermr / openVirus Public

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petermr edited this page Mar 31, 2020 · 18 revisions

Welcome to the openVirus wiki!

(suggested by @remkop)

Toggle table of contents Pages 80

Home
ami search
ami:section
Are face masks valuable? A tutorial study
Barcamp Open Science@Geneme 2020
Blogpost for GenR and FORCE11
Blogpost for OA Week 2020 TIB Blog
Building SPARQL to Wikidata map for dictionaries
CamBio Hackathon 2020
Computational Cultural Publishing: Climate Emergency Sprint
csv, conf, v6 Abstract
Dictionaries Validation
Dictionaries: creation from Wikidata
Dictionaries: creation from Wikipedia pages
Dictionaries: Deployment and Location
Dictionary: Country
Dictionary: Diseases
Dictionary: Drugs
Dictionary: Funders
Dictionary: Non pharmaceutical Interventions
Dictionary: Overview
Dictionary: schema
dictionary: TEMPLATE
Dictionary: Testing and Tracing
Dictionary: Viruses
Dictionary: Zoonosis
Documentation of getpapers & ami
Documentation: Drug
Documentation: Overview
FAQ
Ferret
Five Minute Search, Citizen Science, and Guides
getpapers
getpapers TUTORIAL for EUPMC search
GETTING STARTED
How ami search works
How much should I record?
INSTALLING ami3
Introduction
Jupyter Notebooks
Maintaining and Updating Dictionaries
medrxiv biorxiv download
mini projects: overview
miniproject: TEMPLATE
miniproject: viral epidemics and country
miniproject: viral epidemics and disease
miniproject: viral epidemics and drugs
miniproject: viral epidemics and non pharmaceutical interventions
miniproject: viral epidemics and organization
miniproject: viral epidemics and viruses
miniproject: viral epidemics and zoonoses
MiniProject:Testing and tracing in viral epidemics
miniprojects
ml: basics
ml: tools
openVirus: SPARQL queries of four core dictionaries
Outreach
Outreach: GeNeMe barcamp
Outreach: InCoB2021 PMR presentation
PMR: TODO
Presentation COAR
Project template
Project: Dictionaries
Project: eTheses for openVirus
pygetpapers
Records and Reports
Running a jupyter notebook using docker
Running ami3 with Docker
software for projects
Tasks, People and Roles
Tools : SPARQL
Tools: ami3
Tools: Docker
Tools: git
Tools: Keras in Python
Tools: KNIME
Tools: maven
Understanding full.dataTables.html in ami search
What is openVirus? (OpenPublishingTalk)
WikiCite Conference 2020

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