GitHub - pepkit/looper: A job submitter for Portable Encapsulated Projects

Looper is a pipeline submission engine. The typical use case is to run a bioinformatics pipeline across many different input samples. Instructions are in the documentation.

Name		Name	Last commit message	Last commit date
Latest commit History 2,992 Commits
.github/workflows		.github/workflows
divvy_templates		divvy_templates
docs		docs
docs_jupyter		docs_jupyter
examples		examples
looper		looper
requirements		requirements
tests		tests
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
.readthedocs.yaml		.readthedocs.yaml
LICENSE.txt		LICENSE.txt
MANIFEST.in		MANIFEST.in
README.md		README.md
bash_complete.sh		bash_complete.sh
logo_looper.svg		logo_looper.svg
looper_runtime_plot.R		looper_runtime_plot.R
mkdocs.yml		mkdocs.yml
pytest.ini		pytest.ini
setup.cfg		setup.cfg
setup.py		setup.py
update-usage-docs.sh		update-usage-docs.sh

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pepkit/looper

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