IEEG-recon is a modular pipeline to reconstruct iEEG electrode locations in MRI images. The pipeline is available in both MATLAB and python computing environments.
See https://ieeg-recon.readthedocs.io/
If you use IEEG-recon, please cite our paper: Alfredo Lucas, Brittany H Scheid, Akash Ranjan Pattnaik, Ryan Gallagher, Marissa Mojena, Ashley Tranquille, Brian Prager, Ezequiel Gleichgerrcht, Ruxue Gong, Brian Litt, Kathryn A Davis, Sandhitsu Das, Joel M Stein, & Nishant Sinha. (2023). iEEG-recon: A Fast and Scalable Pipeline for Accurate Reconstruction of Intracranial Electrodes and Implantable Devices. MedRxiv, 2023.06.12.23291286. https://doi.org/10.1101/2023.06.12.23291286