CQAPaper

Reproducible research directory for paper on the Quadratic Ascent algorithms CQA and UQA, which are implemented in the galosh/profillic github repo.

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
AA_priorstart_results_50.pdf		AA_priorstart_results_50.pdf
AA_priorstart_results_75.pdf		AA_priorstart_results_75.pdf
Abrahams-2009aa-results-withCorrectProfillicCalls.csv		Abrahams-2009aa-results-withCorrectProfillicCalls.csv
Abrahams-2009aa-results.R		Abrahams-2009aa-results.R
Abrahams-2009aa-results.csv		Abrahams-2009aa-results.csv
BW_vs_CBW_BW.pdf		BW_vs_CBW_BW.pdf
BW_vs_CBW_CBW.pdf		BW_vs_CBW_CBW.pdf
CQAPaper.bib		CQAPaper.bib
DNA_priorstart_results_75.pdf		DNA_priorstart_results_75.pdf
DNA_priorstart_results_90.pdf		DNA_priorstart_results_90.pdf
DNA_uniformstart_results_75.pdf		DNA_uniformstart_results_75.pdf
DNA_uniformstart_results_90.pdf		DNA_uniformstart_results_90.pdf
HMM.pdf		HMM.pdf
LICENSE		LICENSE
Plan7.pdf		Plan7.pdf
Plan7ForwardByState_Deletion.pdf		Plan7ForwardByState_Deletion.pdf
Plan7ForwardByState_Insertion.pdf		Plan7ForwardByState_Insertion.pdf
Plan7ForwardByState_Match.pdf		Plan7ForwardByState_Match.pdf
Plan7ForwardInTime.pdf		Plan7ForwardInTime.pdf
Plan7Parameters.pdf		Plan7Parameters.pdf
README.md		README.md
elsarticle-CQA-harv.pdf		elsarticle-CQA-harv.pdf
elsarticle-CQA-harv.tex		elsarticle-CQA-harv.tex

pedlefsen/CQAPaper