PhyDGET is a method for analyzing transcriptome-wide expression data in a phylogenetic context to highlight genes whose expression is changing on particular branches of a phylogeny. PhyDGET is a Pythone3-based parallelized program that connects differential gene expression data transformation to Phylogenetic Comparative Methods (BayesTraits). PhyDGET also includes post-analysis tools for interpreting the results.
For complete details, see the manual for PhyDGET:
https://github.com/peaselab/PhyDGET/blob/main/phydget.pdf
or
https://github.com/peaselab/PhyDGET/blob/main/phydget.html
Link to publication: TBA
Please also include the URL (https://www.github.com/peaselab/phydget).
Be sure also to cite BayesTrait.
- James B. Pease - www.peaselab.org
- David de la Cerda - www.peaselab.org
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