This repository contains the code and data required to perform the analysis for the manuscript https://doi.org/10.1101/2021.07.13.21260393

We quantified the effectiveness of vaccination with BNT162b2 (Pfizer-BioNTech mRNA-based vaccine) against household transmission of SARS-CoV-2 in Israel. We fit a chain binomial model of transmission to estimate vaccine effectiveness against susceptibility to infection and infectiousness given infection in household settings.

The R folder contains the code to simulate the household data. To perform the analysis, run the HH_transmission_model_project.Rmd file.