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cooler cload pairs memory usage error #412

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sfh1111 opened this issue Apr 10, 2024 · 0 comments
Open

cooler cload pairs memory usage error #412

sfh1111 opened this issue Apr 10, 2024 · 0 comments

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@sfh1111
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sfh1111 commented Apr 10, 2024

Hi,

Thanks for super cool tool:)
I am trying to use cooler cload pairs on 230Gb pairs.gz file with the following command: cooler cload pairs -c1 2 -p1 3 -c2 4 -p2 5 --assembly mm10 --temp-dir tmp mm10_genome.sizes.200 xxx.nodups.pairs.gz xxx.cool . the tmpxxxx.cool file is created normally but when it writs the data to the final cool file it collapses and gives the following error: TERM_MEMLIMIT: job killed after reaching LSF memory usage limit. Exited with exit code 137.
I have already tried to give this job more memory but it always stop at the same point when it start writing to the cool file and then stop after 4000Kb.
Any suggestions?

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