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EncodeClient, UCSCClient enhancements #34

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gfudenberg opened this issue May 15, 2020 · 1 comment

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gfudenberg commented May 15, 2020 •

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it would be great to enhance the functionality of bioframe.EncodeClient

auto download the metadata.tsv if its not there
auto build the needed directory structure if not there
verify that provided assembly matches encode's list

gfudenberg added the enhancement label

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gfudenberg commented Jun 1, 2021

UCSCClient suggestions:

provide some list of available dbs / assemblies / organisms
informative errors for unavailable organism/assembly

gfudenberg changed the title ~~EncodeClient enhancement~~ EncodeClient, UCSCClient enhancements

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0.5.0 roadmap #92

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gfudenberg mentioned this issue

Add curated assembly info utility #139

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