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@open-prophetdb

OpenProphetDB

To understand the molecular mechanisms of human diseases or predict known drugs for new indications (Drug Repurposing).
README.md

Hi there 👋

Welcome to the OpenProphetDB! The OpenProphetDB is a research group which is interested in the following topics: construct and integrate knowledge graph, multi-omics data and deep learning models to understand the molecular mechanisms of human diseases or predict known drugs for new indications (Drug Repurposing). Visit our official website for more information.

Useful Resources

Network Medicine Platform

If you are interested in using knowledge graph and deep learning models to understand the molecular mechanisms of human diseases or predict known drugs for new indications (Drug Repurposing). please visit our Network Medicine Platform to get started or the biomedgps repository to install the platform locally.

Knowledge Graph & Deep Learning Models

If you are interested in constructing knowledge graph and deep learning models, please visit the biomedgps-data repository or the DocWebsite.

Labeling Tool for Biomedical Publications

If you want to join us to construct knowledge graph, please visit our Labeling Tool to get started or the prophet-studio repository to install the tool locally.

Pinned

  1. biomedgps biomedgps Public

    A knowledge graph system with graph neural network for drug repurposing and disease mechanism.

    Rust 12 1

  2. biomedgps-data biomedgps-data Public

    Biomedical knowledge graph & graph neural network models for drug repurposing.

    Jupyter Notebook 4 1

  3. prophet-studio prophet-studio Public

    A labeling tool for building your own domain knowledgebase from biomedical publications. Let us read the papers routinely and build our own domain knowledgebase together.

    Python 2

  4. dgl-ke dgl-ke Public

    Forked from awslabs/dgl-ke

    High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

    Python

  5. biominer-components biominer-components Public

    UI Components for BioMiner

    TypeScript 1

  6. prophetdb.org prophetdb.org Public

    A website for OpenProphetDB community.

    1

Repositories

Showing 10 of 14 repositories
  • biomedgps Public

    A knowledge graph system with graph neural network for drug repurposing and disease mechanism.

    Rust 12 AGPL-3.0 1 2 0 Updated May 9, 2024
  • biomedical-knowledgebases Public

    A collection of biomedical knowledgebases, ontologies, and datasets.

    1 0 0 0 Updated Apr 16, 2024
  • biominer-components Public

    UI Components for BioMiner

    TypeScript 1 0 0 0 Updated Apr 1, 2024
  • ontology-matcher Public

    It's a simple ontology matcher for building a set of cleaned ontologies. [For BioMedGPS project]

    Python 1 MIT 0 0 0 Updated Mar 29, 2024
  • biomedgps-data Public

    Biomedical knowledge graph & graph neural network models for drug repurposing.

    Jupyter Notebook 4 1 7 0 Updated Mar 13, 2024
  • graph-builder Public

    A Graph Builder for BioMedGPS Project

    Python 0 MIT 1 0 0 Updated Feb 21, 2024
  • prophetdb.org Public

    A website for OpenProphetDB community.

    0 MIT 1 0 0 Updated Feb 16, 2024
  • dgl-ke Public Forked from awslabs/dgl-ke

    High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

    Python 0 Apache-2.0 197 0 0 Updated Jan 28, 2024
  • .github Public
    0 0 0 0 Updated Jan 20, 2024
  • prophet-studio Public

    A labeling tool for building your own domain knowledgebase from biomedical publications. Let us read the papers routinely and build our own domain knowledgebase together.

    Python 2 0 4 0 Updated Dec 5, 2023
View all repositories

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