Antibacterial Peptide Binary Classification

Predictive models that can determine, given an antibacterial peptide, whether it is also an antibiofilm peptide.

(NOTE: the dataset is imbalanced)

The accuracy is measured by Matthews’s correlation coefficient (MCC)

Preprocess

• 2-mers or 3-mers
• Optionally apply PCA

Methods

• Logistic Regression
• Naive Bayes Classifier
• Support Vector Machine
• K-nearest Neightbor Classifier