omicidx

Overview repo for the omicidx project -- start here!

Metadata from NCBI SRA, GEO, and Biosample

This project is broken up into several repositories:

• REST API
• Example ipython and R markdown documents
• Builder
• Documentation (a work-in-progress)
• Parsers (not really for public consumptions)

REST API

Current REST API location:

• http://api.omicidx.cancerdatasci.org/

Current REST API Documentation (two forms, but same information):

• Interactive Swagger documentation
• ReDoc documentation

Example queries

• Get study by accession
• Get sample by accession
• Search for human RNA-Seq experiments with "cancer" in any text