Debarcer v2.1.0

This is the latest release of debarcer 2. It includes bug fixes and new features.
See the wiki for information on how to run debarcer.

Debarcer v2.0.3-alpha

Fixed installation error

Debarcer v2.0.2-alpha

Fixed one-allele mismatch error in CONS files
Updated consensus plot function
Corrected reference sequence Debarcer output
Added header, ref_bases, removed vcf data in cons files
Added condition to handle SPACER=FALSE case
Fixed error executing args.func(args) in debarcer.py

Debarcer v2.0.1-alpha

• Added framework for plotting with ggplot (/utils/generate_plots.py)
• Added log output with timestamps to debarcer.py
• Improved config handling
• Improved performance of UMIGroup.getClosest(self, pos, pos_threshold)
• Removed unnecessary VCF output (i.e. empty VCF files)

Debarcer v2.0.0-alpha

This is the first alpha release of Debarcer 2, a complete rewrite of Debarcer in Python. See the wiki for information on how to use this software.

Decarcer v0.3.1

This release freezes developments as of June 1, 2016. Here's a brief overview of changes since the last release:

• Amplicons with nearly identical start coordinates are merged to increase data usage.
• Added rudimentary downsampling plots.
• Updated barplots to show positions.
• Cleaned up the package directory structure.

Debarcer v0.3.0

This release incorporates several changes

• Improved execution from the command line with argument flags
• Eliminated unnecessary copying of source data to results directory
• Ability to specify target output directory

Debarcer v0.2.0

This release freezes a functional version of the debarcer pipeline currently being used for the SimSenSeq manuscript.