Moved internal TODOs to Issues #25 and #26

ocbe-uio · Oct 21, 2020 · 6e7f001 · 6e7f001
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diff --git a/R/DIscBIO-generic-clusteringOrder.R b/R/DIscBIO-generic-clusteringOrder.R
@@ -22,7 +22,6 @@ setMethod(
     "KmeanOrder",
     signature = "DISCBIO",
     definition = function(object, quiet, export, filename) {
-        # TODO: update Notebook not to depend on pseudoTimeOrdering instead
         warning(
             "KmeanOrder() has been replaced with pseudoTimeOrdering(), ",
             "which performs pseudo-time ordering for both k-means ",

diff --git a/R/Jaccard.R b/R/Jaccard.R
@@ -44,7 +44,6 @@ Jaccard <- function(
     } else if (Clustering == "MB") {
         target_col <- object@MBclusters$clusterid
     }
-    # TODO: replace with in-house code to eliminate boot package dependency
     results <- boot(
         data      = object@fdata[, which(target_col == i)],
         statistic = JS,